ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11443014	serine/threonine-protein kinase ATM
mtr-r.5	11443014	serine/threonine-protein kinase ATM
mtr-m.5	11443014	serine/threonine-protein kinase ATM
gma-u.5	100788458	serine/threonine-protein kinase ATM
ppo-u.5	7454490	serine/threonine-protein kinase ATM
ath-u.5	ATM	Serine/Threonine-kinase ATM-like protein
vvi-u.5	100250198	serine/threonine-protein kinase ATM
sly-u.5	101253578	serine/threonine-protein kinase ATM
osa-u.5	4326151	serine/threonine-protein kinase ATM
zma-u.5	103651852	serine/threonine-protein kinase ATM

functional annotation

KEGG

mtr03440 [list] [network] Homologous recombination (67 genes)

GO BP

GO:0006281 [list] [network] DNA repair

(347 genes)

IEA

GO CC

GO MF

GO:0004674 [list] [network] protein serine/threonine kinase activity	(452 genes)	IEA
GO:0005515 [list] [network] protein binding	(5045 genes)	IEA

Protein

XP_003601268.2 [sequence] [blastp]
XP_039687423.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, nucl 2, vacu 1, E.R. 1, pero 1, E.R._vacu 1	(predict for XP_003601268.2)
plas 6, E.R. 1, nucl 1, mito 1, vacu 1, cyto_E.R. 1	(predict for XP_039687423.1)

Subcellular
localization
TargetP

other 8, chlo 3	(predict for XP_003601268.2)
other 8, scret 3	(predict for XP_039687423.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11443014	mtr-r.5 for 11443014	mtr-m.5 for 11443014	gma-u.5 for 100788458	ppo-u.5 for 7454490	ath-u.5 for ATM	vvi-u.5 for 100250198	sly-u.5 for 101253578	osa-u.5 for 4326151	zma-u.5 for 103651852

Ortholog ID: 10137

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ATM

Function^*

serine/threonine-protein kinase ATM

Serine/Threonine-kinase ATM-like protein

serine/threonine-protein kinase ATM

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04136	Autophagy - other	2
ppo04518	Integrin signaling	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03013	Nucleocytoplasmic transport	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	4
bna03450	Non-homologous end-joining	4
bna03420	Nucleotide excision repair	2
bna00564	Glycerophospholipid metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	4
bna03450	Non-homologous end-joining	4
bna03420	Nucleotide excision repair	2
bna00564	Glycerophospholipid metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	4
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	4
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03440	Homologous recombination	2

Expression

Expression pattern

Entrez Gene ID^*

11443014

100788458

7454490

823975

103873550

100250198

107892485

121206048

111199007

106434303

102620162

101253578

102596182

107763003

107828155

4326151

103651852

123139615

123062353

123442347

8072354

100845900

5719003

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11443014 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11443014 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	3	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11443014 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11443014 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**