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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-r.7   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.9   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-e.2   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.4.bio   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.4.hor   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.4.lig   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.4.str   ATM   Serine/Threonine-kinase ATM-like protein 
 ath-m.4.tis   ATM   Serine/Threonine-kinase ATM-like protein 
 bra-r.6   103873550   serine/threonine-protein kinase ATM 
 bna-r.1   111199007   serine/threonine-protein kinase ATM 
 bna-r.1   106434303   serine/threonine-protein kinase ATM 
 ghi-r.1   121206048   serine/threonine-protein kinase ATM 
 ghi-r.1   107892485   serine/threonine-protein kinase ATM 
 ghi-r.1   107933634   serine/threonine-protein kinase ATM 
 cit-r.1   102620162   serine/threonine-protein kinase ATM 
 gma-u.5   100788458   serine/threonine-protein kinase ATM 
 vvi-u.5   100250198   serine/threonine-protein kinase ATM 
 ppo-u.5   7454490   serine/threonine-protein kinase ATM 
 mtr-u.5   11443014   serine/threonine-protein kinase ATM 
 sly-u.5   101253578   serine/threonine-protein kinase ATM 
 sot-r.1   102596182   serine/threonine-protein kinase ATM 
 nta-r.1   107828155   serine/threonine-protein kinase ATM 
 nta-r.1   107763003   serine/threonine-protein kinase ATM 
 osa-u.5   4326151   serine/threonine-protein kinase ATM 
 zma-u.5   103651852   serine/threonine-protein kinase ATM 
 tae-r.2   123182586   serine/threonine-protein kinase ATM 
 tae-r.2   123139615   serine/threonine-protein kinase ATM 
 tae-r.2   123062353   serine/threonine-protein kinase ATM 
 hvu-r.1   123442347   serine/threonine-protein kinase ATM 
 sbi-r.1   8072354   serine/threonine-protein kinase ATM 
 bdi-r.1   100845900   serine/threonine-protein kinase ATM 
 cre-r.1   CHLRE_13g564350v5   uncharacterized protein 

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Top 50 coexpressed genes to ATM (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ATM (ath-u.5 coexpression data)

CoexMap"823975"


athATM | Entrez gene ID : 823975      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0043247 [list] [network] telomere maintenance in response to DNA damage  (2 genes)  TAS  
GO:0032204 [list] [network] regulation of telomere maintenance  (5 genes)  IGI  
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing  (6 genes)  IMP  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (9 genes)  IMP  
GO:0010332 [list] [network] response to gamma radiation  (14 genes)  IMP  
GO:0033044 [list] [network] regulation of chromosome organization  (16 genes)  IGI  
GO:0010212 [list] [network] response to ionizing radiation  (22 genes)  IMP  
GO:0007129 [list] [network] homologous chromosome pairing at meiosis  (31 genes)  IGI  
GO:0007131 [list] [network] reciprocal meiotic recombination  (44 genes)  IMP  
GO:0051321 [list] [network] meiotic cell cycle  (135 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO:0048609 [list] [network] multicellular organismal reproductive process  (201 genes)  IGI  
GO:0006281 [list] [network] DNA repair  (203 genes)  IEA IMP  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IMP  
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000285 [list] [network] 1-phosphatidylinositol-3-phosphate 5-kinase activity  (4 genes)  TAS  
GO:0004674 [list] [network] protein serine/threonine kinase activity  (433 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319707.1 [sequence] [blastp]
NP_001326745.1 [sequence] [blastp]
NP_001326746.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for NP_001319707.1)
chlo 4,  nucl 3,  cysk_nucl 2,  mito 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_001326745.1)
chlo 4,  nucl 3,  cysk_nucl 2,  mito 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_001326746.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001319707.1)
other 8  (predict for NP_001326745.1)
other 8  (predict for NP_001326746.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ATM
ath-r.7
for
ATM
ath-m.9
for
ATM
ath-e.2
for
ATM
ath-m.4.bio
for
ATM
ath-m.4.hor
for
ATM
ath-m.4.lig
for
ATM
ath-m.4.str
for
ATM
ath-m.4.tis
for
ATM
bra-r.6
for
103873550
bna-r.1
for
111199007
bna-r.1
for
106434303
ghi-r.1
for
121206048
ghi-r.1
for
107892485
ghi-r.1
for
107933634
cit-r.1
for
102620162
gma-u.5
for
100788458
vvi-u.5
for
100250198
ppo-u.5
for
7454490
mtr-u.5
for
11443014
sly-u.5
for
101253578
sot-r.1
for
102596182
nta-r.1
for
107828155
nta-r.1
for
107763003
osa-u.5
for
4326151
zma-u.5
for
103651852
tae-r.2
for
123182586
tae-r.2
for
123139615
tae-r.2
for
123062353
hvu-r.1
for
123442347
sbi-r.1
for
8072354
bdi-r.1
for
100845900
cre-r.1
for
CHLRE_13g564350v5


Ortholog ID: 10137
Species ath bra bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol ATM LOC103873550 LOC111199007 LOC106434303 LOC121206048 LOC107892485 LOC107933634 LOC102620162 LOC100788458 LOC100250198 LOC7454490 LOC11443014 LOC101253578 LOC102596182 LOC107828155 LOC107763003 LOC4326151 LOC103651852 LOC123182586 LOC123139615 LOC123062353 LOC123442347 LOC8072354 LOC100845900 CHLRE_13g564350v5
Function* Serine/Threonine-kinase ATM-like protein serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM serine/threonine-protein kinase ATM uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03450 Non-homologous end-joining 4
bna03420 Nucleotide excision repair 2
bna00564 Glycerophospholipid metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03450 Non-homologous end-joining 4
bna03420 Nucleotide excision repair 2
bna00564 Glycerophospholipid metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 4
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 4
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03440 Homologous recombination 4
tae03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823975 103873550 111199007 106434303 121206048 107892485 107933634 102620162 100788458 100250198 7454490 11443014 101253578 102596182 107828155 107763003 4326151 103651852 123182586 123139615 123062353 123442347 8072354 100845900 5719003
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