ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g550900v5	uncharacterized protein
ath-u.5	AT4G38350	Patched family protein
ath-u.5	AT1G42470	Patched family protein
gma-u.5	100813262	NPC intracellular cholesterol transporter 1
gma-u.5	100810332	NPC intracellular cholesterol transporter 1
gma-u.5	100795551	NPC intracellular cholesterol transporter 1
sly-u.5	101260723	uncharacterized LOC101260723
osa-u.5	9266400	uncharacterized LOC9266400
zma-u.5	103641981	uncharacterized LOC103641981
bra-r.6	103829698	NPC intracellular cholesterol transporter 1
bra-r.6	103835189	NPC intracellular cholesterol transporter 1
bra-r.6	103864816	NPC intracellular cholesterol transporter 1
vvi-u.5	100242789	uncharacterized LOC100242789
vvi-u.5	100257163	uncharacterized LOC100257163
ppo-u.5	7481690	uncharacterized LOC7481690
ppo-u.5	7485640	uncharacterized LOC7485640
ppo-u.5	18096072	uncharacterized LOC18096072
mtr-u.5	25490313	NPC intracellular cholesterol transporter 1
mtr-u.5	11425301	NPC intracellular cholesterol transporter 1
tae-r.2	123054170	NPC intracellular cholesterol transporter 1
tae-r.2	123046314	NPC intracellular cholesterol transporter 1
tae-r.2	123190059	NPC intracellular cholesterol transporter 1
hvu-r.1	123427500	NPC intracellular cholesterol transporter 1-like
ghi-r.1	107925446	NPC intracellular cholesterol transporter 1
ghi-r.1	107922255	NPC intracellular cholesterol transporter 1
ghi-r.1	107922168	NPC intracellular cholesterol transporter 1
bna-r.1	106418356	NPC intracellular cholesterol transporter 1-like
bna-r.1	106352580	NPC intracellular cholesterol transporter 1-like
bna-r.1	106361551	NPC intracellular cholesterol transporter 1-like
sbi-r.1	8056603	Niemann-Pick C1 protein
sot-r.1	102600216	Niemann-Pick C1 protein-like
cit-r.1	102615536	uncharacterized LOC102615536
cit-r.1	102618032	uncharacterized LOC102618032
bdi-r.1	100832617	NPC intracellular cholesterol transporter 1
nta-r.1	107824090	uncharacterized LOC107824090

Top 50 coexpressed genes to CHLRE_12g550900v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g550900v5 (cre-r.1 coexpression data)

CoexMap"5719660"

[Cytoscape]

Annotation

functional annotation

KEGG

cre04142 [list] [network] Lysosome (27 genes)

GO BP

GO CC

GO:0016020 [list] [network] membrane

(1543 genes)

IEA

GO MF

Protein

XP_042919000.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, chlo 4, extr 1, E.R. 1, pero 1

(predict for XP_042919000.1)

Subcellular
localization
TargetP

chlo 3

(predict for XP_042919000.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g550900v5	ath-u.5 for AT4G38350	ath-u.5 for AT1G42470	gma-u.5 for 100813262	gma-u.5 for 100810332	gma-u.5 for 100795551	sly-u.5 for 101260723	osa-u.5 for 9266400	zma-u.5 for 103641981	bra-r.6 for 103829698	bra-r.6 for 103835189	bra-r.6 for 103864816	vvi-u.5 for 100242789	vvi-u.5 for 100257163	ppo-u.5 for 7481690	ppo-u.5 for 7485640	ppo-u.5 for 18096072	mtr-u.5 for 25490313	mtr-u.5 for 11425301	tae-r.2 for 123054170	tae-r.2 for 123046314	tae-r.2 for 123190059	hvu-r.1 for 123427500	ghi-r.1 for 107925446	ghi-r.1 for 107922255	ghi-r.1 for 107922168	bna-r.1 for 106418356	bna-r.1 for 106352580	bna-r.1 for 106361551	sbi-r.1 for 8056603	sot-r.1 for 102600216	cit-r.1 for 102615536	cit-r.1 for 102618032	bdi-r.1 for 100832617	nta-r.1 for 107824090

Ortholog

Ortholog ID: 5159

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Patched family protein