ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g559850v5	uncharacterized protein
ath-u.5	TEX1	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100812126	THO complex subunit 3
gma-u.5	100782507	THO complex subunit 3
sly-u.5	101265940	THO complex subunit 3
osa-u.5	4346657	THO complex subunit 3
zma-u.5	100272607	uncharacterized LOC100272607
bra-r.6	103845047	THO complex subunit 3
vvi-u.5	100241262	THO complex subunit 3
ppo-u.5	7457665	THO complex subunit 3
mtr-u.5	11438034	THO complex subunit 3
tae-r.2	123121123	THO complex subunit 3
tae-r.2	123111657	THO complex subunit 3
tae-r.2	123103455	THO complex subunit 3
hvu-r.1	123398371	THO complex subunit 3
ghi-r.1	107931189	THO complex subunit 3
ghi-r.1	107903400	THO complex subunit 3
bna-r.1	106397248	THO complex subunit 3
bna-r.1	106385055	THO complex subunit 3
sbi-r.1	8071866	THO complex subunit 3
sot-r.1	102597071	THO complex subunit 3
cit-r.1	102626591	THO complex subunit 3
bdi-r.1	100838230	THO complex subunit 3
nta-r.1	107759125	THO complex subunit 3
nta-r.1	107784599	THO complex subunit 3

Annotation

functional annotation

KEGG

cre03013 [list] [network] Nucleocytoplasmic transport (47 genes)

cre03040 [list] [network] Spliceosome (105 genes)

GO BP

GO:0006406 [list] [network] mRNA export from nucleus

(27 genes)

IEA

GO CC

GO:0000445 [list] [network] THO complex part of transcription export complex

(7 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_001703156.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1

(predict for XP_001703156.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001703156.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g559850v5	ath-u.5 for TEX1	gma-u.5 for 100812126	gma-u.5 for 100782507	sly-u.5 for 101265940	osa-u.5 for 4346657	zma-u.5 for 100272607	bra-r.6 for 103845047	vvi-u.5 for 100241262	ppo-u.5 for 7457665	mtr-u.5 for 11438034	tae-r.2 for 123121123	tae-r.2 for 123111657	tae-r.2 for 123103455	hvu-r.1 for 123398371	ghi-r.1 for 107931189	ghi-r.1 for 107903400	bna-r.1 for 106397248	bna-r.1 for 106385055	sbi-r.1 for 8071866	sot-r.1 for 102597071	cit-r.1 for 102626591	bdi-r.1 for 100838230	nta-r.1 for 107759125	nta-r.1 for 107784599

Ortholog

Ortholog ID: 10399

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

TEX1

Function^*

uncharacterized protein

Transducin/WD40 repeat-like superfamily protein

THO complex subunit 3

uncharacterized LOC100272607

THO complex subunit 3

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	3
ath03040	Spliceosome	2
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5
gma00970	Aminoacyl-tRNA biosynthesis	2
gma03050	Proteasome	2
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	9
ppo03013	Nucleocytoplasmic transport	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03010	Ribosome	3
mtr03050	Proteasome	3
mtr03018	RNA degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8
tae03010	Ribosome	4
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8
tae03010	Ribosome	5
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03013	Nucleocytoplasmic transport	3
tae03010	Ribosome	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	4
ghi03018	RNA degradation	2
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	8
ghi03018	RNA degradation	2
ghi00220	Arginine biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00340	Histidine metabolism	2
bna01230	Biosynthesis of amino acids	2
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2
bna00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	8
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta00564	Glycerophospholipid metabolism	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta00564	Glycerophospholipid metabolism	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

5728678

835712

100812126

100782507

101265940

4346657

100272607

103845047

100241262

7457665

11438034

123121123

123111657

123103455

123398371

107931189

107903400

106397248

106385055

8071866

102597071

102626591

100838230

107759125

107784599

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g559850v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g559850v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g559850v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g559850v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**