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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g559850v5   uncharacterized protein 
 ath-u.5   TEX1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100812126   THO complex subunit 3 
 gma-u.5   100782507   THO complex subunit 3 
 sly-u.5   101265940   THO complex subunit 3 
 osa-u.5   4346657   THO complex subunit 3 
 zma-u.5   100272607   uncharacterized LOC100272607 
 vvi-u.5   100241262   THO complex subunit 3 
 ppo-u.5   7457665   THO complex subunit 3 
 mtr-u.5   11438034   THO complex subunit 3 

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Top 50 coexpressed genes to CHLRE_12g559850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g559850v5 (cre-r.1 coexpression data)

CoexMap"5728678"


creCHLRE_12g559850v5 | Entrez gene ID : 5728678      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03013 [list] [network] Nucleocytoplasmic transport (47 genes)
cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0006406 [list] [network] mRNA export from nucleus  (27 genes)  IEA  
GO CC
GO:0000445 [list] [network] THO complex part of transcription export complex  (7 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_001703156.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_001703156.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001703156.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g559850v5

.
ath-u.5
for
TEX1

.
gma-u.5
for
100812126

.
gma-u.5
for
100782507

.
sly-u.5
for
101265940

.
osa-u.5
for
4346657

.
zma-u.5
for
100272607

.
vvi-u.5
for
100241262

.
ppo-u.5
for
7457665

.
mtr-u.5
for
11438034

.


Ortholog ID: 10399
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TEX1 LOC100812126 LOC100782507 LOC101265940 LOC4346657 LOC100272607 LOC103845047 LOC100241262 LOC7457665 LOC11438034 LOC123103455 LOC123121123 LOC123398371 LOC107931189 LOC107903400 LOC106397248 LOC106385055 CHLRE_12g559850v5 LOC8071866 LOC102597071 LOC102626591 LOC100838230 LOC107759125 LOC107784599
Function* Transducin/WD40 repeat-like superfamily protein THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 uncharacterized LOC100272607 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 uncharacterized protein THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3 THO complex subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03050 Proteasome 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 9
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr03050 Proteasome 3
mtr03018 RNA degradation 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 3
tae03010 Ribosome 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 4
ghi03018 RNA degradation 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03018 RNA degradation 2
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
bna00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00480 Glutathione metabolism 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 8
sot04075 Plant hormone signal transduction 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta00564 Glycerophospholipid metabolism 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta00564 Glycerophospholipid metabolism 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835712 100812126 100782507 101265940 4346657 100272607 103845047 100241262 7457665 11438034 123103455 123121123 123398371 107931189 107903400 106397248 106385055 5728678 8071866 102597071 102626591 100838230 107759125 107784599
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