ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_11g479300v5	uncharacterized protein
ath-u.5	AT1G05120	Helicase protein with RING/U-box domain-containing protein
ath-u.5	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100786366	DNA repair protein RAD16
gma-u.5	100798333	DNA repair protein RAD16
sly-u.5	101254345	DNA repair protein RAD16-like
osa-u.5	4343361	DNA repair protein RAD16
zma-u.5	103633219	DNA repair protein RAD16
bra-r.6	103836539	DNA repair protein RAD16
bra-r.6	103844175	ATP-dependent helicase rhp16
bra-r.6	103844170	DNA repair protein RAD16
vvi-u.5	100267049	DNA repair protein RAD16
ppo-u.5	7463406	DNA repair protein RAD16
mtr-u.5	11443944	DNA repair protein RAD16
tae-r.2	123044702	DNA repair protein RAD16
tae-r.2	123188450	DNA repair protein RAD16
tae-r.2	123052565	DNA repair protein RAD16
hvu-r.1	123425921	DNA repair protein RAD16
ghi-r.1	121214653	DNA repair protein RAD16
ghi-r.1	107887153	DNA repair protein RAD16
bna-r.1	106423628	DNA repair protein RAD16
bna-r.1	106400558	ATP-dependent helicase rhp16
bna-r.1	111213864	ATP-dependent helicase rhp16-like
sbi-r.1	8077499	DNA repair protein RAD16
sot-r.1	102584572	DNA repair protein RAD16-like
sot-r.1	102586115	ATP-dependent helicase rhp16-like
sot-r.1	102590390	ATP-dependent helicase rhp16-like
cit-r.1	102630106	DNA repair protein RAD16
bdi-r.1	100826734	DNA repair protein RAD16
nta-r.1	107765031	DNA repair protein RAD16
nta-r.1	107775959	ATP-dependent helicase rhp16-like

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity	(31 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(704 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA

Protein

XP_042919700.1 [sequence] [blastp]
XP_042919701.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_042919700.1)
nucl 10	(predict for XP_042919701.1)

Subcellular
localization
TargetP

mito 8, other 4	(predict for XP_042919700.1)
mito 8, other 4	(predict for XP_042919701.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_11g479300v5	ath-u.5 for AT1G05120	ath-u.5 for AT1G02670	gma-u.5 for 100786366	gma-u.5 for 100798333	sly-u.5 for 101254345	osa-u.5 for 4343361	zma-u.5 for 103633219	bra-r.6 for 103836539	bra-r.6 for 103844175	bra-r.6 for 103844170	vvi-u.5 for 100267049	ppo-u.5 for 7463406	mtr-u.5 for 11443944	tae-r.2 for 123044702	tae-r.2 for 123188450	tae-r.2 for 123052565	hvu-r.1 for 123425921	ghi-r.1 for 121214653	ghi-r.1 for 107887153	bna-r.1 for 106423628	bna-r.1 for 106400558	bna-r.1 for 111213864	sbi-r.1 for 8077499	sot-r.1 for 102584572	sot-r.1 for 102586115	sot-r.1 for 102590390	cit-r.1 for 102630106	bdi-r.1 for 100826734	nta-r.1 for 107765031	nta-r.1 for 107775959

Ortholog

Ortholog ID: 3640

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Helicase protein with RING/U-box domain-containing protein

P-loop containing nucleoside triphosphate hydrolases superfamily protein

DNA repair protein RAD16

DNA repair protein RAD16-like

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16

DNA repair protein RAD16

ATP-dependent helicase rhp16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03460	Fanconi anemia pathway	2
ath03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03040	Spliceosome	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2
nta04820	Cytoskeleton in muscle cells	2
nta04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

66055334

839319

839532

100786366

100798333

101249085

101251601

4343361

103633219

103836539

103844175

103844170

100267049

7463406

11443944

123044702

123188450

123052565

123425921

121214653

107887153

106400558

111213864

106401094

8077499

102586115

102597176

102630106

100826734

107765031

142173220

142173222

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_11g479300v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_11g479300v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	1	1	1	3	1	1	1	3	1	2	3	1	3	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_11g479300v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_11g479300v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**