ATTED-II : GeneCoexpression result

Species	Gene	Description
nta-r.1	107814819	uncharacterized LOC107814819
nta-r.1	107765292	uncharacterized LOC107765292
sly-u.5	101253090	uncharacterized LOC101253090
sot-r.1	102585350	uncharacterized LOC102585350
ath-u.5	GAF1	Polymerase/histidinol phosphatase-like protein
gma-u.5	121172931	ubiquitin C-terminal hydrolase 13-like
gma-u.5	100776746	protein GAMETOPHYTE DEFECTIVE 1
bra-r.6	103845416	protein GAMETOPHYTE DEFECTIVE 1
bra-r.6	103851531	protein GAMETOPHYTE DEFECTIVE 1
vvi-u.5	100241609	protein GAMETOPHYTE DEFECTIVE 1
ppo-u.5	7488147	uncharacterized LOC7488147
mtr-u.5	11408905	uncharacterized LOC11408905
ghi-r.1	107959072	protein GAMETOPHYTE DEFECTIVE 1
ghi-r.1	107906177	protein GAMETOPHYTE DEFECTIVE 1
bna-r.1	106385719	protein GAMETOPHYTE DEFECTIVE 1-like
bna-r.1	106412410	protein GAMETOPHYTE DEFECTIVE 1-like
bna-r.1	BNAC09G35310D	protein GAMETOPHYTE DEFECTIVE 1
cit-r.1	102614383	protein GAMETOPHYTE DEFECTIVE 1
osa-u.5	9271052	uncharacterized LOC9271052
osa-u.5	4349529	uncharacterized LOC4349529
osa-u.5	4351650	protein GAMETOPHYTE DEFECTIVE 1
zma-u.5	100279258	uncharacterized LOC100279258
tae-r.2	123096712	uncharacterized LOC123096712
tae-r.2	123086297	uncharacterized LOC123086297
tae-r.2	123091729	uncharacterized LOC123091729
hvu-r.1	123448121	uncharacterized LOC123448121
sbi-r.1	8072894	uncharacterized LOC8072894
sbi-r.1	8079950	uncharacterized LOC8079950
bdi-r.1	100830772	uncharacterized LOC100830772
cre-r.1	CHLRE_02g088050v5	uncharacterized protein

Annotation

functional annotation

KEGG

nta03008 [list] [network] Ribosome biogenesis in eukaryotes (157 genes)

GO BP

GO:0008033 [list] [network] tRNA processing

(196 genes)

IEA

GO CC

GO:0005655 [list] [network] nucleolar ribonuclease P complex

(5 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(2607 genes)

IEA

Protein

XP_016495769.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4, chlo 1

(predict for XP_016495769.1)

Subcellular
localization
TargetP

other 9

(predict for XP_016495769.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107814819	nta-r.1 for 107765292	sly-u.5 for 101253090	sot-r.1 for 102585350	ath-u.5 for GAF1	gma-u.5 for 121172931	gma-u.5 for 100776746	bra-r.6 for 103845416	bra-r.6 for 103851531	vvi-u.5 for 100241609	ppo-u.5 for 7488147	mtr-u.5 for 11408905	ghi-r.1 for 107959072	ghi-r.1 for 107906177	bna-r.1 for 106385719	bna-r.1 for 106412410	bna-r.1 for BNAC09G35310D	cit-r.1 for 102614383	osa-u.5 for 9271052	osa-u.5 for 4349529	osa-u.5 for 4351650	zma-u.5 for 100279258	tae-r.2 for 123096712	tae-r.2 for 123086297	tae-r.2 for 123091729	hvu-r.1 for 123448121	sbi-r.1 for 8072894	sbi-r.1 for 8079950	bdi-r.1 for 100830772	cre-r.1 for CHLRE_02g088050v5

Ortholog

Ortholog ID: 7003

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

GAF1

Function^*

uncharacterized LOC107814819

uncharacterized LOC107765292

uncharacterized LOC101253090

uncharacterized LOC102585350

Polymerase/histidinol phosphatase-like protein

ubiquitin C-terminal hydrolase 13-like

protein GAMETOPHYTE DEFECTIVE 1

uncharacterized LOC7488147

uncharacterized LOC11408905

protein GAMETOPHYTE DEFECTIVE 1

protein GAMETOPHYTE DEFECTIVE 1-like

protein GAMETOPHYTE DEFECTIVE 1

uncharacterized LOC9271052

uncharacterized LOC4349529

protein GAMETOPHYTE DEFECTIVE 1

uncharacterized LOC100279258

uncharacterized LOC123096712

uncharacterized LOC123086297

uncharacterized LOC123091729

uncharacterized LOC123448121

uncharacterized LOC8072894

uncharacterized LOC8079950

uncharacterized LOC100830772

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	8
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	7
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8
ghi03013	Nucleocytoplasmic transport	6
ghi03250	Viral life cycle - HIV-1	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5
ghi03013	Nucleocytoplasmic transport	3
ghi03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	4
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	4

Expression

Expression pattern

Entrez Gene ID^*

107814819

107765292

101253090

102585350

836120

121172931

100776746

103845416

103851531

100241609

7488147

11408905

107959072

107906177

106385719

106412410

106416691

102614383

9271052

4349529

4351650

100279258

123096712

123086297

123091729

123448121

8072894

8079950

100830772

5727432

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107814819 (nta-r.1 coexpression data)

Top 50 enrichment test to 107814819 (nta-r.1 coexpression data)


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	1	1	1	2	2	1	1	1	2	3	1	3	1	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107814819 (nta-r.1 coexpression data)

Top 50 enrichment test to 107814819 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**