ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-e.1	4328674	26S proteasome regulatory subunit 8 homolog A
osa-u.5	4328674	26S proteasome regulatory subunit 8 homolog A
osa-r.6	4328674	26S proteasome regulatory subunit 8 homolog A
osa-m.8	4328674	26S proteasome regulatory subunit 8 homolog A
osa-u.5	4341448	26S proteasome regulatory subunit 8 homolog A
tae-r.2	123148137	26S proteasome regulatory subunit 8 homolog A
tae-r.2	123136898	26S proteasome regulatory subunit 8 homolog A
tae-r.2	123144346	26S proteasome regulatory subunit 8 homolog A
hvu-r.1	123407310	26S proteasome regulatory subunit 8 homolog A
hvu-r.1	123401343	26S proteasome regulatory subunit 8 homolog A-like
bdi-r.1	100844854	26S proteasome regulatory subunit 8 homolog A
bdi-r.1	100833280	26S proteasome regulatory subunit 8 homolog A
zma-u.5	100273032	26S protease regulatory subunit 8 homolog B
zma-u.5	100274445	uncharacterized LOC100274445
sbi-r.1	8082935	26S protease regulatory subunit 8 homolog A
sbi-r.1	8082246	26S protease regulatory subunit 8 homolog A
sbi-r.1	8061694	26S protease regulatory subunit 8 homolog A
ath-u.5	RPT6A	regulatory particle triple-A ATPase 6A
ath-u.5	AT5G20000	AAA-type ATPase family protein
gma-u.5	100776268	26S protease regulatory subunit 8 homolog A-like
gma-u.5	100812783	26S protease regulatory subunit 8 homolog A-like
sly-u.5	101245359	26S proteasome regulatory subunit 8 homolog A
sly-u.5	101245649	26S proteasome regulatory subunit 8 homolog A
bra-r.6	103845704	26S proteasome regulatory subunit 8 homolog A
bra-r.6	103851317	26S proteasome regulatory subunit 8 homolog A
bra-r.6	103856410	26S proteasome regulatory subunit 8 homolog A
vvi-u.5	100254957	26S proteasome regulatory subunit 8 homolog A
vvi-u.5	100254376	26S proteasome regulatory subunit 8 homolog A
ppo-u.5	7457846	26S proteasome regulatory subunit 8 homolog A
ppo-u.5	7462629	26S proteasome regulatory subunit 8 homolog A
mtr-u.5	25493284	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107907436	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107932074	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107938814	26S proteasome regulatory subunit 8 homolog A
bna-r.1	106441534	26S proteasome regulatory subunit 8 homolog A-like
bna-r.1	106439479	26S proteasome regulatory subunit 8 homolog A
bna-r.1	106425811	26S proteasome regulatory subunit 8 homolog A-like
sot-r.1	102596259	26S protease regulatory subunit 8 homolog A
cit-r.1	102610684	26S proteasome regulatory subunit 8 homolog A
nta-r.1	107831822	26S proteasome regulatory subunit 8 homolog A
nta-r.1	107816419	26S proteasome regulatory subunit 8 homolog A
nta-r.1	107812523	26S proteasome regulatory subunit 8 homolog A
cre-r.1	CHLRE_04g216600v5	uncharacterized protein

Top 50 coexpressed genes to 4328674 (osa-e.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4328674 (osa-e.1 coexpression data)

CoexMap"4328674"

[Cytoscape]

Annotation

functional annotation

KEGG

osa03050 [list] [network] Proteasome (68 genes)

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(157 genes)

IEA

GO CC

GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex

(22 genes)

IEA

GO MF

GO:0036402 [list] [network] proteasome-activating activity	(14 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(413 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2335 genes)	IEA

Protein

XP_015626915.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cysk 3

(predict for XP_015626915.1)

Subcellular
localization
TargetP

other 8, chlo 4

(predict for XP_015626915.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-e.1 for 4328674	osa-u.5 for 4328674	osa-r.6 for 4328674	osa-m.8 for 4328674	osa-u.5 for 4341448	tae-r.2 for 123148137	tae-r.2 for 123136898	tae-r.2 for 123144346	hvu-r.1 for 123407310	hvu-r.1 for 123401343	bdi-r.1 for 100844854	bdi-r.1 for 100833280	zma-u.5 for 100273032	zma-u.5 for 100274445	sbi-r.1 for 8082935	sbi-r.1 for 8082246	sbi-r.1 for 8061694	ath-u.5 for RPT6A	ath-u.5 for AT5G20000	gma-u.5 for 100776268	gma-u.5 for 100812783	sly-u.5 for 101245359	sly-u.5 for 101245649	bra-r.6 for 103845704	bra-r.6 for 103851317	bra-r.6 for 103856410	vvi-u.5 for 100254957	vvi-u.5 for 100254376	ppo-u.5 for 7457846	ppo-u.5 for 7462629	mtr-u.5 for 25493284	ghi-r.1 for 107907436	ghi-r.1 for 107932074	ghi-r.1 for 107938814	bna-r.1 for 106441534	bna-r.1 for 106439479	bna-r.1 for 106425811	sot-r.1 for 102596259	cit-r.1 for 102610684	nta-r.1 for 107831822	nta-r.1 for 107816419	nta-r.1 for 107812523	cre-r.1 for CHLRE_04g216600v5

Ortholog

Ortholog ID: 3501

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RPT6A

Function^*

26S proteasome regulatory subunit 8 homolog A

26S proteasome regulatory subunit 8 homolog A-like

26S proteasome regulatory subunit 8 homolog A

26S protease regulatory subunit 8 homolog B

uncharacterized LOC100274445

26S protease regulatory subunit 8 homolog A

regulatory particle triple-A ATPase 6A

AAA-type ATPase family protein

26S protease regulatory subunit 8 homolog A-like

26S proteasome regulatory subunit 8 homolog A

26S proteasome regulatory subunit 8 homolog A-like

26S proteasome regulatory subunit 8 homolog A

26S protease regulatory subunit 8 homolog A

26S proteasome regulatory subunit 8 homolog A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	11
osa04145	Phagosome	3
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	12
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	9
tae03040	Spliceosome	3
tae00760	Nicotinate and nicotinamide metabolism	2
tae01240	Biosynthesis of cofactors	2
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	8
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	11
bdi03015	mRNA surveillance pathway	2
bdi00190	Oxidative phosphorylation	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	9
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	18
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	15
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	8
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2
sbi00240	Pyrimidine metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	9
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma04141	Protein processing in endoplasmic reticulum	3
gma03013	Nucleocytoplasmic transport	2
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	7
gma03013	Nucleocytoplasmic transport	4
gma04141	Protein processing in endoplasmic reticulum	4
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra04141	Protein processing in endoplasmic reticulum	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo00190	Oxidative phosphorylation	4
ppo03010	Ribosome	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	9
mtr03040	Spliceosome	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00240	Pyrimidine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00240	Pyrimidine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	4
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	10
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	6
nta03015	mRNA surveillance pathway	2
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	8
nta00190	Oxidative phosphorylation	3
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	6
nta04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	19
cre04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

4328674

4341448

123148137

123136898

123144346

123407310

123401343

100844854

100833280

100273032

100274445

8082935

8082246

8061694

832121

832122

100776268

100812783

101245359

101245649

103845704

103851317

103856410

100254957

100254376

7457846

7462629

25493284

107907436

107962639

107901192

106441534

106439479

106386726

102596259

102610684

107831822

107816419

107812523

5728638

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	2	2	3	2	2	2	3	2	2	1	3	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4328674 (osa-e.1 coexpression data)

Top 50 enrichment test to 4328674 (osa-e.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**