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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g216600v5   uncharacterized protein 
 ath-u.5   RPT6A   regulatory particle triple-A ATPase 6A 
 ath-u.5   AT5G20000   AAA-type ATPase family protein 
 gma-u.5   100776268   26S protease regulatory subunit 8 homolog A-like 
 gma-u.5   100812783   26S protease regulatory subunit 8 homolog A-like 
 sly-u.5   101245359   26S proteasome regulatory subunit 8 homolog A 
 sly-u.5   101245649   26S proteasome regulatory subunit 8 homolog A 
 osa-u.5   4328674   26S proteasome regulatory subunit 8 homolog A 
 osa-u.5   4341448   26S proteasome regulatory subunit 8 homolog A 
 zma-u.5   100273032   26S protease regulatory subunit 8 homolog B 
 zma-u.5   100274445   uncharacterized LOC100274445 
 vvi-u.5   100254957   26S proteasome regulatory subunit 8 homolog A 
 vvi-u.5   100254376   26S proteasome regulatory subunit 8 homolog A 
 ppo-u.5   7457846   26S proteasome regulatory subunit 8 homolog A 
 ppo-u.5   7462629   26S proteasome regulatory subunit 8 homolog A 
 mtr-u.5   25493284   26S proteasome regulatory subunit 8 homolog A 

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Top 50 coexpressed genes to CHLRE_04g216600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g216600v5 (cre-r.1 coexpression data)

CoexMap"5728638"


creCHLRE_04g216600v5 | Entrez gene ID : 5728638    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03050 [list] [network] Proteasome (36 genes)
GO BP
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex  (11 genes)  IEA  
GO MF
GO:0036402 [list] [network] proteasome-activating activity  (8 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042924962.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 1,  chlo_mito 1  (predict for XP_042924962.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_042924962.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g216600v5

.
ath-u.5
for
RPT6A

.
ath-u.5
for
AT5G20000

.
gma-u.5
for
100776268

.
gma-u.5
for
100812783

.
sly-u.5
for
101245359

.
sly-u.5
for
101245649

.
osa-u.5
for
4328674

.
osa-u.5
for
4341448

.
zma-u.5
for
100273032

.
zma-u.5
for
100274445

.
vvi-u.5
for
100254957

.
vvi-u.5
for
100254376

.
ppo-u.5
for
7457846

.
ppo-u.5
for
7462629

.
mtr-u.5
for
25493284

.


Ortholog ID: 3501
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol RPT6A AT5G20000 LOC100776268 LOC100812783 LOC101245359 LOC101245649 LOC4341448 LOC4328674 LOC100274445 LOC100273032 LOC103856410 LOC103851317 LOC100254376 LOC100254957 LOC7457846 LOC7462629 LOC25493284 LOC123148137 LOC123136898 LOC123401343 LOC123407310 LOC107901192 LOC107962639 LOC106386726 LOC106439479 CHLRE_04g216600v5 LOC8082246 LOC8082935 LOC102596259 LOC102610684 LOC100833280 LOC100844854 LOC107831822 LOC107812523
Function* regulatory particle triple-A ATPase 6A AAA-type ATPase family protein 26S protease regulatory subunit 8 homolog A-like 26S protease regulatory subunit 8 homolog A-like 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A uncharacterized LOC100274445 26S protease regulatory subunit 8 homolog B 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A-like 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A uncharacterized protein 26S protease regulatory subunit 8 homolog A 26S protease regulatory subunit 8 homolog A 26S protease regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A 26S proteasome regulatory subunit 8 homolog A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 9
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04141 Protein processing in endoplasmic reticulum 3
gma03013 Nucleocytoplasmic transport 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma03013 Nucleocytoplasmic transport 4
gma04141 Protein processing in endoplasmic reticulum 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 11
osa04145 Phagosome 3
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 15
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 18
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00190 Oxidative phosphorylation 4
ppo03010 Ribosome 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 9
mtr03040 Spliceosome 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 12
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03040 Spliceosome 3
tae00760 Nicotinate and nicotinamide metabolism 2
tae01240 Biosynthesis of cofactors 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00240 Pyrimidine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00240 Pyrimidine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 19
cre04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 11
bdi03015 mRNA surveillance pathway 2
bdi00190 Oxidative phosphorylation 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832121 832122 100776268 100812783 101245359 101245649 4341448 4328674 100274445 100273032 103856410 103851317 100254376 100254957 7457846 7462629 25493284 123148137 123136898 123401343 123407310 107901192 107962639 106386726 106439479 5728638 8082246 8082935 102596259 102610684 100833280 100844854 107831822 107812523
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