ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107938814	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107962639	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107932074	26S proteasome regulatory subunit 8 homolog A
ghi-r.1	107907436	26S proteasome regulatory subunit 8 homolog A
ath-u.5	RPT6A	regulatory particle triple-A ATPase 6A
ath-u.5	AT5G20000	AAA-type ATPase family protein
bra-r.6	103856410	26S proteasome regulatory subunit 8 homolog A
bra-r.6	103845704	26S proteasome regulatory subunit 8 homolog A
bra-r.6	103851317	26S proteasome regulatory subunit 8 homolog A
bna-r.1	106439479	26S proteasome regulatory subunit 8 homolog A
bna-r.1	106380723	26S proteasome regulatory subunit 8 homolog A-like
bna-r.1	106386726	26S proteasome regulatory subunit 8 homolog A
cit-r.1	102610684	26S proteasome regulatory subunit 8 homolog A
gma-u.5	100776268	26S protease regulatory subunit 8 homolog A-like
gma-u.5	100812783	26S protease regulatory subunit 8 homolog A-like
vvi-u.5	100254376	26S proteasome regulatory subunit 8 homolog A
vvi-u.5	100254957	26S proteasome regulatory subunit 8 homolog A
ppo-u.5	7462629	26S proteasome regulatory subunit 8 homolog A
ppo-u.5	7457846	26S proteasome regulatory subunit 8 homolog A
mtr-u.5	25493284	26S proteasome regulatory subunit 8 homolog A
sly-u.5	101245359	26S proteasome regulatory subunit 8 homolog A
sly-u.5	101245649	26S proteasome regulatory subunit 8 homolog A
sot-r.1	102596259	26S protease regulatory subunit 8 homolog A
nta-r.1	107785983	26S protease regulatory subunit 8 homolog A-like
nta-r.1	107812523	26S proteasome regulatory subunit 8 homolog A
nta-r.1	107816419	26S proteasome regulatory subunit 8 homolog A
osa-u.5	4341448	26S proteasome regulatory subunit 8 homolog A
osa-u.5	4328674	26S proteasome regulatory subunit 8 homolog A
zma-u.5	100274445	uncharacterized LOC100274445
zma-u.5	100273032	26S protease regulatory subunit 8 homolog B
tae-r.2	123144346	26S proteasome regulatory subunit 8 homolog A
tae-r.2	123171566	26S proteasome regulatory subunit 8 homolog A
tae-r.2	123156917	26S proteasome regulatory subunit 8 homolog A
hvu-r.1	123401343	26S proteasome regulatory subunit 8 homolog A-like
hvu-r.1	123407310	26S proteasome regulatory subunit 8 homolog A
sbi-r.1	8061694	26S protease regulatory subunit 8 homolog A
sbi-r.1	8082246	26S protease regulatory subunit 8 homolog A
sbi-r.1	8082935	26S protease regulatory subunit 8 homolog A
bdi-r.1	100833280	26S proteasome regulatory subunit 8 homolog A
bdi-r.1	100844854	26S proteasome regulatory subunit 8 homolog A
cre-r.1	CHLRE_04g216600v5	uncharacterized protein

Top 50 coexpressed genes to 107938814 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107938814 (ghi-r.1 coexpression data)

CoexMap"107938814"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03050 [list] [network] Proteasome (162 genes)

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(406 genes)

IEA

GO CC

GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex

(58 genes)

IEA

GO MF

GO:0036402 [list] [network] proteasome-activating activity	(40 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(974 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5155 genes)	IEA

Protein

XP_016727547.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, mito 1, plas 1, E.R. 1, E.R._plas 1, mito_plas 1

(predict for XP_016727547.1)

Subcellular
localization
TargetP

other 7

(predict for XP_016727547.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107938814	ghi-r.1 for 107962639	ghi-r.1 for 107932074	ghi-r.1 for 107907436	ath-u.5 for RPT6A	ath-u.5 for AT5G20000	bra-r.6 for 103856410	bra-r.6 for 103845704	bra-r.6 for 103851317	bna-r.1 for 106439479	bna-r.1 for 106380723	bna-r.1 for 106386726	cit-r.1 for 102610684	gma-u.5 for 100776268	gma-u.5 for 100812783	vvi-u.5 for 100254376	vvi-u.5 for 100254957	ppo-u.5 for 7462629	ppo-u.5 for 7457846	mtr-u.5 for 25493284	sly-u.5 for 101245359	sly-u.5 for 101245649	sot-r.1 for 102596259	nta-r.1 for 107785983	nta-r.1 for 107812523	nta-r.1 for 107816419	osa-u.5 for 4341448	osa-u.5 for 4328674	zma-u.5 for 100274445	zma-u.5 for 100273032	tae-r.2 for 123144346	tae-r.2 for 123171566	tae-r.2 for 123156917	hvu-r.1 for 123401343	hvu-r.1 for 123407310	sbi-r.1 for 8061694	sbi-r.1 for 8082246	sbi-r.1 for 8082935	bdi-r.1 for 100833280	bdi-r.1 for 100844854	cre-r.1 for CHLRE_04g216600v5

Ortholog

Ortholog ID: 3501

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RPT6A

Function^*