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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   SK2   shikimate kinase 2 
 ath-u.5   SK2   shikimate kinase 2 
 ath-r.7   SK2   shikimate kinase 2 
 ath-m.9   SK2   shikimate kinase 2 
 ath-e.2   SK2   shikimate kinase 2 
 ath-m.4.bio   SK2   shikimate kinase 2 
 ath-m.4.lig   SK2   shikimate kinase 2 
 ath-m.4.str   SK2   shikimate kinase 2 
 ath-m.4.tis   SK2   shikimate kinase 2 
 ath-u.5   SK1   shikimate kinase 1 
 bra-r.6   103864307   shikimate kinase 1, chloroplastic 
 bra-r.6   103850170   shikimate kinase 2, chloroplastic 
 bna-r.1   106375912   shikimate kinase 1, chloroplastic 
 bna-r.1   106439097   shikimate kinase 2, chloroplastic 
 bna-r.1   106420775   shikimate kinase 1, chloroplastic 
 ghi-r.1   107897604   shikimate kinase 1, chloroplastic 
 ghi-r.1   107947315   shikimate kinase 1, chloroplastic 
 ghi-r.1   107948413   shikimate kinase 1, chloroplastic 
 cit-r.1   102616277   shikimate kinase 2, chloroplastic-like 
 cit-r.1   102624107   shikimate kinase 1, chloroplastic 
 gma-u.5   100784290   shikimate kinase 1, chloroplastic 
 gma-u.5   100807736   shikimate kinase-like protein 
 vvi-u.5   100244261   shikimate kinase 3, chloroplastic 
 vvi-u.5   100262762   shikimate kinase 
 ppo-u.5   7486337   shikimate kinase 1, chloroplastic 
 ppo-u.5   7474813   shikimate kinase, chloroplastic 
 mtr-u.5   120577441   shikimate kinase 1, chloroplastic 
 sly-u.5   SK   shikimate kinase precursor 
 sot-r.1   102589179   shikimate kinase, chloroplastic 
 nta-r.1   107767446   shikimate kinase, chloroplastic 
 nta-r.1   107818889   shikimate kinase, chloroplastic-like 
 osa-u.5   4337165   shikimate kinase 3, chloroplastic-like 
 osa-u.5   4340547   shikimate kinase 2, chloroplastic-like 
 osa-u.5   4330732   shikimate kinase 1, chloroplastic-like 
 zma-u.5   100191326   Shikimate kinase 1 chloroplastic 
 zma-u.5   100286040   shikimate kinase 
 zma-u.5   100283304   shikimate kinase 
 tae-r.2   123165722   shikimate kinase 2, chloroplastic 
 tae-r.2   123047183   shikimate kinase 3, chloroplastic 
 tae-r.2   123054990   shikimate kinase 3, chloroplastic 
 hvu-r.1   123412235   shikimate kinase 2, chloroplastic-like 
 hvu-r.1   123403369   shikimate kinase 1, chloroplastic-like 
 hvu-r.1   123428211   shikimate kinase 3, chloroplastic-like 
 sbi-r.1   110434391   shikimate kinase 1, chloroplastic-like 
 bdi-r.1   100836535   shikimate kinase 2, chloroplastic 
 bdi-r.1   100831349   shikimate kinase 1, chloroplastic 
 cre-r.1   CHLRE_10g436350v5   uncharacterized protein 

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Top 50 coexpressed genes to SK2 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SK2 (ath-m.4.hor coexpression data)

CoexMap"830108"


athSK2 | Entrez gene ID : 830108      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 2 2 2 1 1 1 2 3 3 3 3 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (56 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (4 genes)  IDA  
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (50 genes)  TAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM TAS  
GO MF
GO:0004765 [list] [network] shikimate kinase activity  (4 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190969.1 [sequence] [blastp]
NP_195664.2 [sequence] [blastp]
NP_974715.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for NP_001190969.1)
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_195664.2)
nucl 6,  nucl_plas 4,  chlo 1,  plas 1,  extr 1,  cysk 1,  chlo_mito 1  (predict for NP_974715.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for NP_001190969.1)
other 4,  chlo 3  (predict for NP_195664.2)
other 4,  chlo 3  (predict for NP_974715.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
SK2
ath-u.5
for
SK2
ath-r.7
for
SK2
ath-m.9
for
SK2
ath-e.2
for
SK2
ath-m.4.bio
for
SK2
ath-m.4.lig
for
SK2
ath-m.4.str
for
SK2
ath-m.4.tis
for
SK2
ath-u.5
for
SK1
bra-r.6
for
103864307
bra-r.6
for
103850170
bna-r.1
for
106375912
bna-r.1
for
106439097
bna-r.1
for
106420775
ghi-r.1
for
107897604
ghi-r.1
for
107947315
ghi-r.1
for
107948413
cit-r.1
for
102616277
cit-r.1
for
102624107
gma-u.5
for
100784290
gma-u.5
for
100807736
vvi-u.5
for
100244261
vvi-u.5
for
100262762
ppo-u.5
for
7486337
ppo-u.5
for
7474813
mtr-u.5
for
120577441
sly-u.5
for
SK
sot-r.1
for
102589179
nta-r.1
for
107767446
nta-r.1
for
107818889
osa-u.5
for
4337165
osa-u.5
for
4340547
osa-u.5
for
4330732
zma-u.5
for
100191326
zma-u.5
for
100286040
zma-u.5
for
100283304
tae-r.2
for
123165722
tae-r.2
for
123047183
tae-r.2
for
123054990
hvu-r.1
for
123412235
hvu-r.1
for
123403369
hvu-r.1
for
123428211
sbi-r.1
for
110434391
bdi-r.1
for
100836535
bdi-r.1
for
100831349
cre-r.1
for
CHLRE_10g436350v5


Ortholog ID: 2879
Species ath ath bra bra bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi bdi bdi cre
Symbol SK2 SK1 LOC103864307 LOC103850170 LOC106420775 LOC106355569 LOC107897604 LOC107947315 LOC107948413 LOC102616277 LOC102624107 LOC100807736 LOC100797982 LOC100244261 LOC100262762 LOC7486337 LOC7474813 LOC120577441 SK LOC102589179 LOC107767446 LOC107818889 LOC4337165 LOC4340547 LOC4330732 LOC100191326 LOC100286040 LOC100283304 LOC123165722 LOC123047183 LOC123145478 LOC123412235 LOC123403369 LOC123428211 LOC110434391 LOC100836535 LOC100831349 CHLRE_10g436350v5
Function* shikimate kinase 2 shikimate kinase 1 shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic shikimate kinase-like protein shikimate kinase, chloroplastic shikimate kinase 3, chloroplastic shikimate kinase shikimate kinase 1, chloroplastic shikimate kinase, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase precursor shikimate kinase, chloroplastic shikimate kinase, chloroplastic shikimate kinase, chloroplastic-like shikimate kinase 3, chloroplastic-like shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic-like Shikimate kinase 1 chloroplastic shikimate kinase shikimate kinase shikimate kinase 2, chloroplastic shikimate kinase 3, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic-like shikimate kinase 3, chloroplastic-like shikimate kinase 1, chloroplastic-like shikimate kinase 2, chloroplastic shikimate kinase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath01200 Carbon metabolism 3
ath00350 Tyrosine metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 13
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bra01230 Biosynthesis of amino acids 6
bra00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 6
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 5
bna01230 Biosynthesis of amino acids 4
bna00030 Pentose phosphate pathway 2
bna00230 Purine metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi01230 Biosynthesis of amino acids 9
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi01230 Biosynthesis of amino acids 7
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi01230 Biosynthesis of amino acids 9
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01210 2-Oxocarboxylic acid metabolism 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00620 Pyruvate metabolism 2
gma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 7
vvi04712 Circadian rhythm - plant 3
vvi00940 Phenylpropanoid biosynthesis 3
vvi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 9
vvi01230 Biosynthesis of amino acids 8
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 5
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo00940 Phenylpropanoid biosynthesis 3
ppo00941 Flavonoid biosynthesis 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 13
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00670 One carbon pool by folate 5
ppo01240 Biosynthesis of cofactors 5
ppo00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00270 Cysteine and methionine metabolism 2
mtr01200 Carbon metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
sly00940 Phenylpropanoid biosynthesis 6
sly00360 Phenylalanine metabolism 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot01230 Biosynthesis of amino acids 9
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 5
osa01230 Biosynthesis of amino acids 4
osa00941 Flavonoid biosynthesis 3
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
osa00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa00360 Phenylalanine metabolism 3
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00710 Carbon fixation by Calvin cycle 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00360 Phenylalanine metabolism 15
tae00940 Phenylpropanoid biosynthesis 15
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00230 Purine metabolism 2
tae00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00360 Phenylalanine metabolism 4
hvu00940 Phenylpropanoid biosynthesis 4
hvu01230 Biosynthesis of amino acids 3
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 4
hvu01230 Biosynthesis of amino acids 2
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 10
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sbi01200 Carbon metabolism 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830108 816730 103864307 103850170 106420775 106355569 107897604 107947315 107948413 102616277 102624107 100807736 100797982 100244261 100262762 7486337 7474813 120577441 544078 102589179 107767446 107818889 4337165 4340547 4330732 100191326 100286040 100283304 123165722 123047183 123145478 123412235 123403369 123428211 110434391 100836535 100831349 5716011
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