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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT5G59950   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G02530   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   ALY4   ALWAYS EARLY 4 
 ath-u.5   AT1G66260   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103855473   THO complex subunit 4B 
 bra-r.6   103845414   THO complex subunit 4A 
 bra-r.6   103863747   THO complex subunit 4D 
 bna-r.1   106389530   THO complex subunit 4B 
 bna-r.1   106445878   THO complex subunit 4D 
 ghi-r.1   107922579   THO complex subunit 4D 
 ghi-r.1   107932446   THO complex subunit 4A 
 cit-r.1   102611313   THO complex subunit 4B-like 
 cit-r.1   102622377   THO complex subunit 4D 
 cit-r.1   102629336   THO complex subunit 4A 
 gma-u.5   100801491   THO complex subunit 4D 
 gma-u.5   100785926   THO complex subunit 4B 
 vvi-u.5   100257009   THO complex subunit 4D 
 vvi-u.5   100257081   THO complex subunit 4A 
 vvi-u.5   100258168   THO complex subunit 4B 
 ppo-u.5   7489584   THO complex subunit 4A 
 ppo-u.5   7493558   THO complex subunit 4D 
 ppo-u.5   7485720   THO complex subunit 4A 
 mtr-u.5   25492480   THO complex subunit 4A 
 mtr-u.5   11446087   THO complex subunit 4B 
 mtr-u.5   11406653   THO complex subunit 4D 
 sly-u.5   101266904   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sly-u.5   101268859   THO complex subunit 4D-like 
 sly-u.5   101262878   THO complex subunit 4A 
 sot-r.1   102583179   THO complex subunit 4D 
 sot-r.1   102591640   THO complex subunit 4A-like 
 sot-r.1   102593463   THO complex subunit 4D 
 nta-r.1   107791454   THO complex subunit 4A-like 
 nta-r.1   107796602   THO complex subunit 4A 
 nta-r.1   107808568   THO complex subunit 4C 
 osa-u.5   4345621   THO complex subunit 4D 
 osa-u.5   4351236   THO complex subunit 4A 
 osa-u.5   4349526   THO complex subunit 4A 
 zma-u.5   100279524   THO complex subunit 4 
 zma-u.5   100280157   THO complex subunit 4C 
 zma-u.5   100280336   THO complex subunit 4 
 tae-r.2   123096711   THO complex subunit 4B 
 tae-r.2   123044902   THO complex subunit 4B 
 tae-r.2   123051222   THO complex subunit 4D 
 hvu-r.1   123452129   THO complex subunit 4B-like 
 hvu-r.1   123407428   THO complex subunit 4D-like 
 hvu-r.1   123424545   THO complex subunit 4D-like 
 sbi-r.1   8061518   THO complex subunit 4D 
 sbi-r.1   8084918   THO complex subunit 4A 
 sbi-r.1   8075639   THO complex subunit 4D 
 bdi-r.1   100820831   THO complex subunit 4A 
 bdi-r.1   100821328   THO complex subunit 4D 
 bdi-r.1   100823621   THO complex subunit 4A 
 cre-r.1   CHLRE_10g462250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G59950 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G59950 (ath-m.4.hor coexpression data)

CoexMap"836117"


athAT5G59950 | Entrez gene ID : 836117      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 2 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (105 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001119461.1 [sequence] [blastp]
NP_001190572.1 [sequence] [blastp]
NP_200803.3 [sequence] [blastp]
NP_851229.1 [sequence] [blastp]
NP_974965.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001119461.1)
nucl 7,  mito 3  (predict for NP_001190572.1)
nucl 4,  mito 4,  cyto 1,  chlo 1,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_200803.3)
nucl 6,  mito 4  (predict for NP_851229.1)
nucl 7,  mito 3  (predict for NP_974965.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_001119461.1)
chlo 7,  other 6  (predict for NP_001190572.1)
other 8  (predict for NP_200803.3)
chlo 7,  other 6  (predict for NP_851229.1)
other 6,  chlo 6  (predict for NP_974965.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT5G59950
ath-u.5
for
AT5G59950
ath-r.7
for
AT5G59950
ath-m.9
for
AT5G59950
ath-e.2
for
AT5G59950
ath-m.4.bio
for
AT5G59950
ath-m.4.lig
for
AT5G59950
ath-m.4.str
for
AT5G59950
ath-m.4.tis
for
AT5G59950
ath-u.5
for
AT5G02530
ath-u.5
for
ALY4
ath-u.5
for
AT1G66260
bra-r.6
for
103855473
bra-r.6
for
103845414
bra-r.6
for
103863747
bna-r.1
for
106389530
bna-r.1
for
106445878
ghi-r.1
for
107922579
ghi-r.1
for
107932446
cit-r.1
for
102611313
cit-r.1
for
102622377
cit-r.1
for
102629336
gma-u.5
for
100801491
gma-u.5
for
100785926
vvi-u.5
for
100257009
vvi-u.5
for
100257081
vvi-u.5
for
100258168
ppo-u.5
for
7489584
ppo-u.5
for
7493558
ppo-u.5
for
7485720
mtr-u.5
for
25492480
mtr-u.5
for
11446087
mtr-u.5
for
11406653
sly-u.5
for
101266904
sly-u.5
for
101268859
sly-u.5
for
101262878
sot-r.1
for
102583179
sot-r.1
for
102591640
sot-r.1
for
102593463
nta-r.1
for
107791454
nta-r.1
for
107796602
nta-r.1
for
107808568
osa-u.5
for
4345621
osa-u.5
for
4351236
osa-u.5
for
4349526
zma-u.5
for
100279524
zma-u.5
for
100280157
zma-u.5
for
100280336
tae-r.2
for
123096711
tae-r.2
for
123044902
tae-r.2
for
123051222
hvu-r.1
for
123452129
hvu-r.1
for
123407428
hvu-r.1
for
123424545
sbi-r.1
for
8061518
sbi-r.1
for
8084918
sbi-r.1
for
8075639
bdi-r.1
for
100820831
bdi-r.1
for
100821328
bdi-r.1
for
100823621
cre-r.1
for
CHLRE_10g462250v5


Ortholog ID: 634
Species ath ath ath bra bra bna bna bna ghi ghi cit cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol AT5G59950 AT5G02530 AT1G66260 LOC103845414 LOC103847441 LOC106389530 LOC106412038 LOC106357788 LOC107932446 LOC107937033 LOC102611313 LOC102622377 LOC102630056 LOC100785926 LOC100783362 LOC100257009 LOC100257081 LOC100258168 LOC7489584 LOC7485720 LOC18106636 LOC25492480 LOC11446087 LOC11406653 LOC101268859 LOC101262878 LOC101256343 LOC102583179 LOC102591640 LOC102593463 LOC107805467 LOC107777581 LOC107784716 LOC4345621 LOC4351236 LOC4342793 LOC100280157 LOC100280336 LOC100278324 LOC123156239 LOC123164949 LOC123091728 LOC123407428 LOC123424545 LOC123448119 LOC8061518 LOC8075639 LOC8069134 LOC100823621 LOC100841511 LOC100843825 CHLRE_10g462250v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein THO complex subunit 4A THO complex subunit 4B THO complex subunit 4B THO complex subunit 4C-like THO complex subunit 4A-like THO complex subunit 4A THO complex subunit 4D THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4B-like THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D THO complex subunit 4A THO complex subunit 4B THO complex subunit 4A THO complex subunit 4A THO complex subunit 4D THO complex subunit 4A THO complex subunit 4B THO complex subunit 4D THO complex subunit 4D-like THO complex subunit 4A THO complex subunit 4D THO complex subunit 4D THO complex subunit 4A-like THO complex subunit 4D THO complex subunit 4A THO complex subunit 4A-like THO complex subunit 4D THO complex subunit 4D THO complex subunit 4A THO complex subunit 4A THO complex subunit 4C THO complex subunit 4 uncharacterized LOC100278324 THO complex subunit 4D THO complex subunit 4D THO complex subunit 4B THO complex subunit 4D-like THO complex subunit 4D-like THO complex subunit 4B-like THO complex subunit 4D THO complex subunit 4D THO complex subunit 4B THO complex subunit 4A THO complex subunit 4D THO complex subunit 4B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 6
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath03015 mRNA surveillance pathway 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna00190 Oxidative phosphorylation 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna04626 Plant-pathogen interaction 7
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03040 Spliceosome 4
bna00061 Fatty acid biosynthesis 3
bna00780 Biotin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 12
ghi03013 Nucleocytoplasmic transport 10
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 10
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit04075 Plant hormone signal transduction 2
cit04626 Plant-pathogen interaction 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03015 mRNA surveillance pathway 7
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04712 Circadian rhythm - plant 2
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04814 Motor proteins 4
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03013 Nucleocytoplasmic transport 2
sly03083 Polycomb repressive complex 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03015 mRNA surveillance pathway 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 5
tae04382 Cornified envelope formation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae04141 Protein processing in endoplasmic reticulum 8
tae04144 Endocytosis 8
tae03013 Nucleocytoplasmic transport 6
tae03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu04144 Endocytosis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04144 Endocytosis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 7
sbi03040 Spliceosome 6
sbi04382 Cornified envelope formation 3
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03083 Polycomb repressive complex 2
sbi03015 mRNA surveillance pathway 2
sbi03050 Proteasome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 2
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 6
bdi03060 Protein export 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836117 831923 842943 103845414 103847441 106389530 106412038 106357788 107932446 107937033 102611313 102622377 102630056 100785926 100783362 100257009 100257081 100258168 7489584 7485720 18106636 25492480 11446087 11406653 101268859 101262878 101256343 102583179 102591640 102593463 107805467 107777581 107784716 4345621 4351236 4342793 100280157 100280336 100278324 123156239 123164949 123091728 123407428 123424545 123448119 8061518 8075639 8069134 100823621 100841511 100843825 5723978
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