ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8059031	protein transport protein sec31
sbi-r.1	110430991	RNA-binding protein 1-like
sbi-r.1	8060549	protein MATERNALLY EXPRESSED GENE 5
sbi-r.1	8069038	nuclear speckle RNA-binding protein A
zma-u.5	100382777	uncharacterized LOC100382777
zma-u.5	100274945	uncharacterized LOC100274945
zma-u.5	100281884	uncharacterized LOC100281884
osa-u.5	4339977	RNA-binding protein 1
osa-u.5	4346231	RNA-binding protein 1
osa-u.5	4347640	RNA-binding protein 1
tae-r.2	123088039	RNA-binding protein 2
tae-r.2	123088262	nuclear speckle RNA-binding protein A
hvu-r.1	123413193	RNA-binding protein 2-like
hvu-r.1	123410538	nuclear speckle RNA-binding protein A-like
hvu-r.1	123407174	RNA-binding protein 1-like
bdi-r.1	100821534	nuclear speckle RNA-binding protein A
bdi-r.1	100823400	RNA-binding protein 1
ath-u.5	AT1G76940	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100800440	RNA recognition motif-containing protein
gma-u.5	100816230	RNA-binding protein 2
gma-u.5	100786188	RNA-binding protein with multiple splicing-like protein
bra-r.6	103872923	nuclear speckle RNA-binding protein B
bra-r.6	103832149	nuclear speckle RNA-binding protein A
bra-r.6	103829381	nuclear speckle RNA-binding protein B
vvi-u.5	100265772	RNA-binding protein 1
vvi-u.5	100257637	RNA-binding protein 1
vvi-u.5	100242739	RNA-binding protein 2
ppo-u.5	7464291	RNA-binding protein 1
ppo-u.5	7466407	RNA-binding protein 1
ppo-u.5	7464527	RNA-binding protein 1
mtr-u.5	11444223	RNA-binding protein 2-like
mtr-u.5	11429869	uncharacterized LOC11429869
mtr-u.5	25496067	RNA-binding protein 1
ghi-r.1	107905234	RNA-binding protein 2
ghi-r.1	107932899	uncharacterized LOC107932899
ghi-r.1	107951999	RNA-binding protein 2
bna-r.1	106354641	nuclear speckle RNA-binding protein A
bna-r.1	106348612	nuclear speckle RNA-binding protein B-like
bna-r.1	BNAA06G15070D	nuclear speckle RNA-binding protein B
cit-r.1	102629353	RNA-binding protein 1
cit-r.1	102626977	RNA-binding protein 1-like
cit-r.1	102627431	RNA-binding protein 2
nta-r.1	107765513	RNA-binding protein 2
nta-r.1	107766349	RNA-binding protein 2
nta-r.1	107817690	RNA-binding protein 2
cre-r.1	CHLRE_01g024900v5	uncharacterized protein

Top 50 coexpressed genes to 8059031 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8059031 (sbi-r.1 coexpression data)

CoexMap"8059031"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(267 genes)

IEA

Protein

XP_002460551.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, mito 3, nucl_plas 3

(predict for XP_002460551.2)

Subcellular
localization
TargetP

other 7

(predict for XP_002460551.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8059031	sbi-r.1 for 110430991	sbi-r.1 for 8060549	sbi-r.1 for 8069038	zma-u.5 for 100382777	zma-u.5 for 100274945	zma-u.5 for 100281884	osa-u.5 for 4339977	osa-u.5 for 4346231	osa-u.5 for 4347640	tae-r.2 for 123088039	tae-r.2 for 123088262	hvu-r.1 for 123413193	hvu-r.1 for 123410538	hvu-r.1 for 123407174	bdi-r.1 for 100821534	bdi-r.1 for 100823400	ath-u.5 for AT1G76940	gma-u.5 for 100800440	gma-u.5 for 100816230	gma-u.5 for 100786188	bra-r.6 for 103872923	bra-r.6 for 103832149	bra-r.6 for 103829381	vvi-u.5 for 100265772	vvi-u.5 for 100257637	vvi-u.5 for 100242739	ppo-u.5 for 7464291	ppo-u.5 for 7466407	ppo-u.5 for 7464527	mtr-u.5 for 11444223	mtr-u.5 for 11429869	mtr-u.5 for 25496067	ghi-r.1 for 107905234	ghi-r.1 for 107932899	ghi-r.1 for 107951999	bna-r.1 for 106354641	bna-r.1 for 106348612	bna-r.1 for BNAA06G15070D	cit-r.1 for 102629353	cit-r.1 for 102626977	cit-r.1 for 102627431	nta-r.1 for 107765513	nta-r.1 for 107766349	nta-r.1 for 107817690	cre-r.1 for CHLRE_01g024900v5

Ortholog

Ortholog ID: 782

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

protein transport protein sec31

RNA-binding protein 1-like

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC100274945

uncharacterized LOC100281884

uncharacterized LOC100381978

RNA-binding protein 1

nuclear speckle RNA-binding protein A

proline-rich protein 36

SH3 domain-containing protein C23A1.17

RNA-binding protein 1

nuclear speckle RNA-binding protein A-like

RNA-binding protein 1-like

uncharacterized LOC123400025

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein with multiple splicing-like protein

RNA-binding protein 2

RNA binding domain-containing protein

nuclear speckle RNA-binding protein B

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 1

RNA-binding protein 2

RNA-binding protein 1

nuclear speckle RNA-binding protein A

uncharacterized LOC11429869

RNA-binding protein 1

RNA-binding protein 2-like

RNA-binding protein 2

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC121204792

nuclear speckle RNA-binding protein B-like

nuclear speckle RNA-binding protein B

nuclear speckle RNA-binding protein A

protein MATERNALLY EXPRESSED GENE 5-like

RNA-binding protein 2

RNA-binding protein 1

RNA-binding protein 1-like

RNA-binding protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	4
zma03083	Polycomb repressive complex	3
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	7
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	6
osa04145	Phagosome	3
osa03040	Spliceosome	3
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

8059031

110430991

8060549

100274945

100281884

100381978

4339977

4346231

9269917

123112777

123112779

123152387

123410538

123407174

123400025

100821534

100823400

844029

100786188

100812551

100815695

101267497

103872923

103832149

103829381

100265772

100257637

100242739

7464291

7464527

7462242

11429869

25496067

11424149

107951999

107904558

121204792

106348612

106347327

106371345

102595599

102604584

102629353

102626977

102627431

107765513

107771652

107778330

66052044

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Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	nta	cre	sot	sly
Paralog	4	3	3	2	3	2	1	3	3	3	3	3	3	3	3	3	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8059031 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8059031 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**