ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_01g024900v5	uncharacterized protein
ath-u.5	AT1G76940	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100800440	RNA recognition motif-containing protein
gma-u.5	100816230	RNA-binding protein 2
gma-u.5	100786188	RNA-binding protein with multiple splicing-like protein
osa-u.5	4339977	RNA-binding protein 1
osa-u.5	4346231	RNA-binding protein 1
osa-u.5	9269917	nuclear speckle RNA-binding protein A
zma-u.5	100382777	uncharacterized LOC100382777
zma-u.5	100381978	uncharacterized LOC100381978
zma-u.5	100274945	uncharacterized LOC100274945
vvi-u.5	100265772	RNA-binding protein 1
vvi-u.5	100257637	RNA-binding protein 1
vvi-u.5	100242739	RNA-binding protein 2
ppo-u.5	7464291	RNA-binding protein 1
ppo-u.5	7466407	RNA-binding protein 1
ppo-u.5	7464527	RNA-binding protein 1
mtr-u.5	11429869	uncharacterized LOC11429869
mtr-u.5	11424149	RNA-binding protein 2-like
mtr-u.5	11444223	RNA-binding protein 2-like

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(670 genes)

IEA

Protein

XP_042928450.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, nucl 4, cyto 2, chlo_mito 2, cyto_mito 2, mito_plas 2

(predict for XP_042928450.1)

Subcellular
localization
TargetP

other 8, mito 4

(predict for XP_042928450.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_01g024900v5 .	ath-u.5 for AT1G76940 .	gma-u.5 for 100800440 .	gma-u.5 for 100816230 .	gma-u.5 for 100786188 .	osa-u.5 for 4339977 .	osa-u.5 for 4346231 .	osa-u.5 for 9269917 .	zma-u.5 for 100382777 .	zma-u.5 for 100381978 .	zma-u.5 for 100274945 .	vvi-u.5 for 100265772 .	vvi-u.5 for 100257637 .	vvi-u.5 for 100242739 .	ppo-u.5 for 7464291 .	ppo-u.5 for 7466407 .	ppo-u.5 for 7464527 .	mtr-u.5 for 11429869 .	mtr-u.5 for 11424149 .	mtr-u.5 for 11444223 .

Ortholog

Ortholog ID: 782

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 2

RNA-binding protein with multiple splicing-like protein

RNA binding domain-containing protein

RNA-binding protein 1

uncharacterized LOC100274945

uncharacterized LOC100381978

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 1

RNA-binding protein 2

RNA-binding protein 1

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding protein 2-like

RNA-binding protein 1

proline-rich protein 36

RNA-binding protein 1-like

uncharacterized LOC123400025

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC121204792

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

uncharacterized protein

RNA-binding protein 1-like

protein MATERNALLY EXPRESSED GENE 5

protein MATERNALLY EXPRESSED GENE 5-like

RNA-binding protein 2

RNA-binding protein 1-like

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	6
osa04145	Phagosome	3
osa03040	Spliceosome	3
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	4
zma03083	Polycomb repressive complex	3
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

844029

100812551

100786188

101267497

4339977

4346231

100274945

100381978

103832149

103829381

100265772

100242739

7464527

7462242

25496067

11424149

123152387

123112777

123407174

123400025

107904558

121204792

106371345

106347327

66052044

110430991

8060549

102595599

102604584

102627431

102626977

100821534

100823400

107771652

107765513

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_01g024900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g024900v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	osa	zma	vvi	ppo	mtr	sly	sbi	nta	bra	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	1	1	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_01g024900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g024900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**