ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100257637	RNA-binding protein 1
vvi-r.5	100257637	RNA-binding protein 1
vvi-m.5	100257637	RNA-binding protein 1
vvi-u.5	100242739	RNA-binding protein 2
vvi-u.5	100265772	RNA-binding protein 1
ath-u.5	AT1G76940	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100812551	RNA-binding protein 2
gma-u.5	100816230	RNA-binding protein 2
gma-u.5	100816255	RNA-binding protein
ppo-u.5	7462242	nuclear speckle RNA-binding protein A
ppo-u.5	7464291	RNA-binding protein 1
ppo-u.5	7466407	RNA-binding protein 1
mtr-u.5	11429869	uncharacterized LOC11429869
mtr-u.5	25496067	RNA-binding protein 1
mtr-u.5	11444223	RNA-binding protein 2-like
osa-u.5	4339977	RNA-binding protein 1
osa-u.5	9269917	nuclear speckle RNA-binding protein A
osa-u.5	4346231	RNA-binding protein 1
zma-u.5	100381978	uncharacterized LOC100381978
zma-u.5	100382777	uncharacterized LOC100382777
zma-u.5	100274945	uncharacterized LOC100274945

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(233 genes)

IEA

Protein

XP_002280068.1 [sequence] [blastp]
XP_002280083.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 2, pero 1, mito 1, extr 1	(predict for XP_002280068.1)
cyto 4, nucl 1, mito 1, pero 1, chlo 1, extr 1, cyto_mito 1, cysk_nucl 1, nucl_plas 1, mito_plas 1	(predict for XP_002280083.1)

Subcellular
localization
TargetP

mito 8, other 3	(predict for XP_002280068.1)
mito 8, other 3	(predict for XP_002280083.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100257637	vvi-r.5 for 100257637	vvi-m.5 for 100257637	vvi-u.5 for 100242739	vvi-u.5 for 100265772	ath-u.5 for AT1G76940	gma-u.5 for 100812551	gma-u.5 for 100816230	gma-u.5 for 100816255	ppo-u.5 for 7462242	ppo-u.5 for 7464291	ppo-u.5 for 7466407	mtr-u.5 for 11429869	mtr-u.5 for 25496067	mtr-u.5 for 11444223	osa-u.5 for 4339977	osa-u.5 for 9269917	osa-u.5 for 4346231	zma-u.5 for 100381978	zma-u.5 for 100382777	zma-u.5 for 100274945

Ortholog

Ortholog ID: 782

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein 1

RNA-binding protein 2

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 2

RNA-binding protein with multiple splicing-like protein

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 1

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding protein 2-like

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC121204792

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 2

RNA-binding protein 1-like

RNA binding domain-containing protein

protein MATERNALLY EXPRESSED GENE 5-like

RNA-binding protein 2

RNA-binding protein 1

uncharacterized LOC100274945

uncharacterized LOC100381978

RNA-binding protein 1

proline-rich protein 36

RNA-binding protein 1-like

uncharacterized LOC123400025

RNA-binding protein 1-like

protein MATERNALLY EXPRESSED GENE 5

nuclear speckle RNA-binding protein A

RNA-binding protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	6
osa04145	Phagosome	3
osa03040	Spliceosome	3
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	4
zma03083	Polycomb repressive complex	3
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

100265772

100242739

844029

100812551

100786188

103832149

103829381

7464527

7462242

25496067

11424149

107904558

121204792

106371345

106347327

102627431

102626977

101267497

102595599

102604584

107771652

107765513

4339977

4346231

100274945

100381978

123152387

123112777

123407174

123400025

110430991

8060549

100821534

100823400

66052044

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100257637 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100257637 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	sly	ghi	sot	nta	cre	tae
Paralog	5	1	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100257637 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100257637 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**