ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102629353	RNA-binding protein 1
cit-r.1	102626977	RNA-binding protein 1-like
cit-r.1	102627431	RNA-binding protein 2
ath-u.5	AT1G76940	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103872923	nuclear speckle RNA-binding protein B
bra-r.6	103832149	nuclear speckle RNA-binding protein A
bra-r.6	103829381	nuclear speckle RNA-binding protein B
ghi-r.1	107905234	RNA-binding protein 2
ghi-r.1	107932899	uncharacterized LOC107932899
ghi-r.1	107951999	RNA-binding protein 2
bna-r.1	106354641	nuclear speckle RNA-binding protein A
bna-r.1	106348612	nuclear speckle RNA-binding protein B-like
bna-r.1	BNAA06G15070D	nuclear speckle RNA-binding protein B
gma-u.5	100786188	RNA-binding protein with multiple splicing-like protein
gma-u.5	100815695	RNA-binding protein 2
gma-u.5	100800440	RNA recognition motif-containing protein
vvi-u.5	100265772	RNA-binding protein 1
vvi-u.5	100257637	RNA-binding protein 1
vvi-u.5	100242739	RNA-binding protein 2
ppo-u.5	7464291	RNA-binding protein 1
ppo-u.5	7462242	nuclear speckle RNA-binding protein A
ppo-u.5	7466407	RNA-binding protein 1
mtr-u.5	11424149	RNA-binding protein 2-like
mtr-u.5	11429869	uncharacterized LOC11429869
mtr-u.5	11444223	RNA-binding protein 2-like
nta-r.1	107765513	RNA-binding protein 2
nta-r.1	107766349	RNA-binding protein 2
nta-r.1	107778330	RNA-binding protein 2
osa-u.5	4339977	RNA-binding protein 1
osa-u.5	9269917	nuclear speckle RNA-binding protein A
osa-u.5	4346231	RNA-binding protein 1
zma-u.5	100381978	uncharacterized LOC100381978
zma-u.5	100274945	uncharacterized LOC100274945
zma-u.5	100382777	uncharacterized LOC100382777
tae-r.2	123088039	RNA-binding protein 2
tae-r.2	123088262	nuclear speckle RNA-binding protein A
hvu-r.1	123413193	RNA-binding protein 2-like
hvu-r.1	123410538	nuclear speckle RNA-binding protein A-like
hvu-r.1	123407174	RNA-binding protein 1-like
sbi-r.1	8060549	protein MATERNALLY EXPRESSED GENE 5
sbi-r.1	8069038	nuclear speckle RNA-binding protein A
sbi-r.1	8059031	protein transport protein sec31
bdi-r.1	100836479	RNA-binding protein 1
bdi-r.1	100821534	nuclear speckle RNA-binding protein A
cre-r.1	CHLRE_01g024900v5	uncharacterized protein

Top 50 coexpressed genes to 102629353 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102629353 (cit-r.1 coexpression data)

CoexMap"102629353"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(227 genes)

IEA

Protein

XP_006491963.1 [sequence] [blastp]
XP_006491964.2 [sequence] [blastp]
XP_006491965.2 [sequence] [blastp]
XP_015389994.2 [sequence] [blastp]
XP_024948644.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_006491963.1)
nucl 9, chlo 1, mito 1, chlo_mito 1	(predict for XP_006491964.2)
nucl 9, nucl_plas 6	(predict for XP_006491965.2)
nucl 9	(predict for XP_015389994.2)
nucl 9, nucl_plas 6	(predict for XP_024948644.1)

Subcellular
localization
TargetP

mito 6, other 5	(predict for XP_006491963.1)
mito 6, other 5	(predict for XP_006491964.2)
mito 6, other 5	(predict for XP_006491965.2)
mito 6, other 5	(predict for XP_015389994.2)
mito 6, other 5	(predict for XP_024948644.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102629353	cit-r.1 for 102626977	cit-r.1 for 102627431	ath-u.5 for AT1G76940	bra-r.6 for 103872923	bra-r.6 for 103832149	bra-r.6 for 103829381	ghi-r.1 for 107905234	ghi-r.1 for 107932899	ghi-r.1 for 107951999	bna-r.1 for 106354641	bna-r.1 for 106348612	bna-r.1 for BNAA06G15070D	gma-u.5 for 100786188	gma-u.5 for 100815695	gma-u.5 for 100800440	vvi-u.5 for 100265772	vvi-u.5 for 100257637	vvi-u.5 for 100242739	ppo-u.5 for 7464291	ppo-u.5 for 7462242	ppo-u.5 for 7466407	mtr-u.5 for 11424149	mtr-u.5 for 11429869	mtr-u.5 for 11444223	nta-r.1 for 107765513	nta-r.1 for 107766349	nta-r.1 for 107778330	osa-u.5 for 4339977	osa-u.5 for 9269917	osa-u.5 for 4346231	zma-u.5 for 100381978	zma-u.5 for 100274945	zma-u.5 for 100382777	tae-r.2 for 123088039	tae-r.2 for 123088262	hvu-r.1 for 123413193	hvu-r.1 for 123410538	hvu-r.1 for 123407174	sbi-r.1 for 8060549	sbi-r.1 for 8069038	sbi-r.1 for 8059031	bdi-r.1 for 100836479	bdi-r.1 for 100821534	cre-r.1 for CHLRE_01g024900v5

Ortholog

Ortholog ID: 782

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein 1

RNA-binding protein 1-like

RNA-binding protein 2

RNA-binding (RRM/RBD/RNP motifs) family protein

nuclear speckle RNA-binding protein B

nuclear speckle RNA-binding protein A

nuclear speckle RNA-binding protein B

RNA-binding protein 2

protein MATERNALLY EXPRESSED GENE 5

uncharacterized LOC121204792

nuclear speckle RNA-binding protein B-like

nuclear speckle RNA-binding protein B

nuclear speckle RNA-binding protein A

RNA-binding protein with multiple splicing-like protein

RNA-binding protein 2

RNA-binding protein 1

RNA-binding protein 2

RNA-binding protein 1

nuclear speckle RNA-binding protein A

RNA-binding protein 1

RNA-binding protein 2-like

uncharacterized LOC11429869

RNA-binding protein 1

RNA binding domain-containing protein

protein MATERNALLY EXPRESSED GENE 5-like

RNA-binding protein 2

RNA-binding protein 1

nuclear speckle RNA-binding protein A

RNA-binding protein 1

uncharacterized LOC100381978

uncharacterized LOC100274945

uncharacterized LOC100281884

proline-rich protein 36

SH3 domain-containing protein C23A1.17

RNA-binding protein 1

nuclear speckle RNA-binding protein A-like

RNA-binding protein 1-like

uncharacterized LOC123400025

protein MATERNALLY EXPRESSED GENE 5

protein transport protein sec31

RNA-binding protein 1-like

nuclear speckle RNA-binding protein A

RNA-binding protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bna01240	Biosynthesis of cofactors	4
bna04120	Ubiquitin mediated proteolysis	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	6
bna04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	3
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	2
sot03050	Proteasome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	6
osa04145	Phagosome	3
osa03040	Spliceosome	3
osa03015	mRNA surveillance pathway	3
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	4
zma03083	Polycomb repressive complex	3
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	7
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

102629353

102626977

102627431

844029

103872923

103832149

103829381

107951999

107904558

121204792

106348612

106347327

106371345

100786188

100815695

100812551

100265772

100257637

100242739

7464291

7462242

7464527

11424149

11429869

25496067

101267497

102595599

102604584

107765513

107778330

107771652

4339977

9269917

4346231

100381978

100274945

100281884

123112777

123112779

123152387

123410538

123407174

123400025

8060549

8059031

110430991

100821534

100823400

66052044

The preparation time of this page was 0.1 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	nta	osa	zma	tae	hvu	sbi	bdi	cre	sly	sot
Paralog	3	1	3	3	3	3	3	3	3	3	3	3	2	3	3	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102629353 (cit-r.1 coexpression data)

Top 50 enrichment test to 102629353 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**