ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8062271	vam6/Vps39-like protein
zma-u.5	100275187	vam6/Vps39-like protein
osa-u.5	4333909	vacuolar sorting protein 39
tae-r.2	123090874	vacuolar sorting protein 39
tae-r.2	123095899	vacuolar sorting protein 39
tae-r.2	123087090	vacuolar sorting protein 39
hvu-r.1	123447516	vacuolar sorting protein 39
bdi-r.1	100840876	vam6/Vps39-like protein
ath-u.5	EMB2754	Vacuolar sorting protein 39
gma-u.5	100805342	vacuolar sorting protein 39
gma-u.5	100775609	vacuolar sorting protein 39
sly-u.5	101266347	vacuolar sorting protein 39-like
sly-u.5	101260684	vacuolar sorting protein 39
bra-r.6	103835541	vacuolar sorting protein 39
bra-r.6	103862479	vacuolar sorting protein 39
vvi-u.5	100265014	vacuolar sorting protein 39
ppo-u.5	18099277	vacuolar sorting protein 39
ppo-u.5	7473176	vacuolar sorting protein 39
mtr-u.5	11430244	vacuolar sorting protein 39
ghi-r.1	107913068	vacuolar sorting protein 39
ghi-r.1	107896015	vacuolar sorting protein 39
ghi-r.1	121209709	vacuolar sorting protein 39
bna-r.1	106411049	vacuolar sorting protein 39
bna-r.1	106389810	vacuolar sorting protein 39-like
bna-r.1	106361444	vacuolar sorting protein 39
sot-r.1	102580804	vam6/Vps39-like protein
sot-r.1	102600688	vam6/Vps39-like protein
cit-r.1	102626538	vacuolar sorting protein 39
nta-r.1	107769880	vacuolar sorting protein 39
nta-r.1	107777091	vacuolar sorting protein 39
cre-r.1	CHLRE_06g278124v5	uncharacterized protein

Annotation

functional annotation

KEGG

sbi04148 [list] [network] Efferocytosis (53 genes)

GO BP

GO:0034058 [list] [network] endosomal vesicle fusion	(4 genes)	IEA
GO:0006914 [list] [network] autophagy	(53 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(256 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(412 genes)	IEA

GO CC

GO:0016020 [list] [network] membrane	(3172 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4816 genes)	IEA

GO MF

Protein

XP_002463992.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 3, nucl 2

(predict for XP_002463992.1)

Subcellular
localization
TargetP

other 7, scret 3

(predict for XP_002463992.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8062271	zma-u.5 for 100275187	osa-u.5 for 4333909	tae-r.2 for 123090874	tae-r.2 for 123095899	tae-r.2 for 123087090	hvu-r.1 for 123447516	bdi-r.1 for 100840876	ath-u.5 for EMB2754	gma-u.5 for 100805342	gma-u.5 for 100775609	sly-u.5 for 101266347	sly-u.5 for 101260684	bra-r.6 for 103835541	bra-r.6 for 103862479	vvi-u.5 for 100265014	ppo-u.5 for 18099277	ppo-u.5 for 7473176	mtr-u.5 for 11430244	ghi-r.1 for 107913068	ghi-r.1 for 107896015	ghi-r.1 for 121209709	bna-r.1 for 106411049	bna-r.1 for 106389810	bna-r.1 for 106361444	sot-r.1 for 102580804	sot-r.1 for 102600688	cit-r.1 for 102626538	nta-r.1 for 107769880	nta-r.1 for 107777091	cre-r.1 for CHLRE_06g278124v5

Ortholog

Ortholog ID: 6635

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

EMB2754

Function^*

vam6/Vps39-like protein

vacuolar sorting protein 39

vam6/Vps39-like protein

Vacuolar sorting protein 39

vacuolar sorting protein 39

vacuolar sorting protein 39-like

vacuolar sorting protein 39

vacuolar sorting protein 39-like

vacuolar sorting protein 39

vam6/Vps39-like protein

vacuolar sorting protein 39

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	9
tae00730	Thiamine metabolism	2
tae01240	Biosynthesis of cofactors	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	7
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	8
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	4
ath04148	Efferocytosis	4
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04148	Efferocytosis	4
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
ppo04142	Lysosome	2
ppo04144	Endocytosis	2
ppo05100	Bacterial invasion of epithelial cells	2
ppo00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04148	Efferocytosis	2
mtr00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3
ghi04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04148	Efferocytosis	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	4
cit04144	Endocytosis	2
cit00510	N-Glycan biosynthesis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04148	Efferocytosis	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2
nta04148	Efferocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

8062271

100275187

4333909

123090874

123095899

123087090

123447516

100840876

829815

100805342

100775609

101266347

101260684

103835541

103862479

100265014

18099277

7473176

11430244

107913068

107896015

121209709

106411049

106389810

106361444

102580804

102600688

102626538

107769880

107777091

5723659

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8062271 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8062271 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	1	1	1	2	2	2	1	2	1	3	3	2	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8062271 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8062271 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**