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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   EMB2754   Vacuolar sorting protein 39 
 ath-r.7   EMB2754   Vacuolar sorting protein 39 
 ath-m.9   EMB2754   Vacuolar sorting protein 39 
 ath-e.2   EMB2754   Vacuolar sorting protein 39 
 ath-m.4.bio   EMB2754   Vacuolar sorting protein 39 
 ath-m.4.hor   EMB2754   Vacuolar sorting protein 39 
 ath-m.4.lig   EMB2754   Vacuolar sorting protein 39 
 ath-m.4.str   EMB2754   Vacuolar sorting protein 39 
 ath-m.4.tis   EMB2754   Vacuolar sorting protein 39 
 bra-r.6   103835541   vacuolar sorting protein 39 
 bra-r.6   103862479   vacuolar sorting protein 39 
 bna-r.1   106451967   vacuolar sorting protein 39 
 bna-r.1   106411049   vacuolar sorting protein 39 
 bna-r.1   106389810   vacuolar sorting protein 39-like 
 ghi-r.1   121209709   vacuolar sorting protein 39 
 ghi-r.1   107913068   vacuolar sorting protein 39 
 ghi-r.1   107896015   vacuolar sorting protein 39 
 cit-r.1   102626538   vacuolar sorting protein 39 
 gma-u.5   100805342   vacuolar sorting protein 39 
 gma-u.5   100775609   vacuolar sorting protein 39 
 vvi-u.5   100265014   vacuolar sorting protein 39 
 ppo-u.5   7473176   vacuolar sorting protein 39 
 ppo-u.5   18099277   vacuolar sorting protein 39 
 mtr-u.5   11430244   vacuolar sorting protein 39 
 sly-u.5   101266347   vacuolar sorting protein 39-like 
 sly-u.5   101260684   vacuolar sorting protein 39 
 sot-r.1   102580804   vam6/Vps39-like protein 
 sot-r.1   102600688   vam6/Vps39-like protein 
 nta-r.1   107769880   vacuolar sorting protein 39 
 nta-r.1   107777091   vacuolar sorting protein 39 
 osa-u.5   4333909   vacuolar sorting protein 39 
 zma-u.5   100275187   vam6/Vps39-like protein 
 tae-r.2   123090874   vacuolar sorting protein 39 
 tae-r.2   123095899   vacuolar sorting protein 39 
 tae-r.2   123087090   vacuolar sorting protein 39 
 hvu-r.1   123447516   vacuolar sorting protein 39 
 sbi-r.1   8062271   vam6/Vps39-like protein 
 bdi-r.1   100840876   vam6/Vps39-like protein 
 cre-r.1   CHLRE_06g278124v5   uncharacterized protein 

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Top 50 coexpressed genes to EMB2754 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2754 (ath-u.5 coexpression data)

CoexMap"829815"


athEMB2754 | Entrez gene ID : 829815      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 2 1 2 1 2 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0007033 [list] [network] vacuole organization  (45 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0030897 [list] [network] HOPS complex  (7 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001328378.1 [sequence] [blastp]
NP_195381.6 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_001328378.1)
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_195381.6)
Subcellular
localization
TargetP
other 6  (predict for NP_001328378.1)
other 6  (predict for NP_195381.6)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
EMB2754
ath-r.7
for
EMB2754
ath-m.9
for
EMB2754
ath-e.2
for
EMB2754
ath-m.4.bio
for
EMB2754
ath-m.4.hor
for
EMB2754
ath-m.4.lig
for
EMB2754
ath-m.4.str
for
EMB2754
ath-m.4.tis
for
EMB2754
bra-r.6
for
103835541
bra-r.6
for
103862479
bna-r.1
for
106451967
bna-r.1
for
106411049
bna-r.1
for
106389810
ghi-r.1
for
121209709
ghi-r.1
for
107913068
ghi-r.1
for
107896015
cit-r.1
for
102626538
gma-u.5
for
100805342
gma-u.5
for
100775609
vvi-u.5
for
100265014
ppo-u.5
for
7473176
ppo-u.5
for
18099277
mtr-u.5
for
11430244
sly-u.5
for
101266347
sly-u.5
for
101260684
sot-r.1
for
102580804
sot-r.1
for
102600688
nta-r.1
for
107769880
nta-r.1
for
107777091
osa-u.5
for
4333909
zma-u.5
for
100275187
tae-r.2
for
123090874
tae-r.2
for
123095899
tae-r.2
for
123087090
hvu-r.1
for
123447516
sbi-r.1
for
8062271
bdi-r.1
for
100840876
cre-r.1
for
CHLRE_06g278124v5


Ortholog ID: 6635
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol EMB2754 LOC103835541 LOC103862479 LOC106411049 LOC106389810 LOC106361444 LOC121209709 LOC107913068 LOC107896015 LOC102626538 LOC100805342 LOC100775609 LOC100265014 LOC7473176 LOC18099277 LOC11430244 LOC101266347 LOC101260684 LOC102580804 LOC102600688 LOC107769880 LOC107777091 LOC4333909 LOC100275187 LOC123090874 LOC123095899 LOC123087090 LOC123447516 LOC8062271 LOC100840876 CHLRE_06g278124v5
Function* Vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39-like vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39-like vacuolar sorting protein 39 vam6/Vps39-like protein vam6/Vps39-like protein vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vam6/Vps39-like protein vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vam6/Vps39-like protein vam6/Vps39-like protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 4
ath04148 Efferocytosis 4
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 3
ghi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit04144 Endocytosis 2
cit00510 N-Glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 4
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04148 Efferocytosis 2
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 9
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 8
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829815 103835541 103862479 106411049 106389810 106361444 121209709 107913068 107896015 102626538 100805342 100775609 100265014 7473176 18099277 11430244 101266347 101260684 102580804 102600688 107769880 107777091 4333909 100275187 123090874 123095899 123087090 123447516 8062271 100840876 5723659
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