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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8062271   vam6/Vps39-like protein 
 zma-u.5   100275187   vam6/Vps39-like protein 
 osa-u.5   4333909   vacuolar sorting protein 39 
 ath-u.5   EMB2754   Vacuolar sorting protein 39 
 gma-u.5   100805342   vacuolar sorting protein 39 
 gma-u.5   100775609   vacuolar sorting protein 39 
 sly-u.5   101266347   vacuolar sorting protein 39-like 
 sly-u.5   101260684   vacuolar sorting protein 39 
 vvi-u.5   100265014   vacuolar sorting protein 39 
 ppo-u.5   18099277   vacuolar sorting protein 39 
 ppo-u.5   7473176   vacuolar sorting protein 39 
 mtr-u.5   11430244   vacuolar sorting protein 39 

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Top 50 coexpressed genes to 8062271 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8062271 (sbi-r.1 coexpression data)

CoexMap"8062271"


sbiLOC8062271 | Entrez gene ID : 8062271      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0034058 [list] [network] endosomal vesicle fusion  (4 genes)  IEA  
GO:0006914 [list] [network] autophagy  (53 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (256 genes)  IEA  
GO:0016192 [list] [network] vesicle-mediated transport  (412 genes)  IEA  
GO CC
GO:0016020 [list] [network] membrane  (3172 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
Protein XP_002463992.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  nucl 2  (predict for XP_002463992.1)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for XP_002463992.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8062271

.
zma-u.5
for
100275187

.
osa-u.5
for
4333909

.
ath-u.5
for
EMB2754

.
gma-u.5
for
100805342

.
gma-u.5
for
100775609

.
sly-u.5
for
101266347

.
sly-u.5
for
101260684

.
vvi-u.5
for
100265014

.
ppo-u.5
for
18099277

.
ppo-u.5
for
7473176

.
mtr-u.5
for
11430244

.


Ortholog ID: 6635
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol EMB2754 LOC100775609 LOC100805342 LOC101260684 LOC101266347 LOC4333909 LOC100275187 LOC103835541 LOC103862479 LOC100265014 LOC7473176 LOC18099277 LOC11430244 LOC123095899 LOC123090874 LOC123447516 LOC107913068 LOC121209709 LOC106411049 LOC106389810 CHLRE_06g278124v5 LOC8062271 LOC102580804 LOC102600688 LOC102626538 LOC100840876 LOC107769880 LOC107777091
Function* Vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39-like vacuolar sorting protein 39 vam6/Vps39-like protein vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39 vacuolar sorting protein 39-like uncharacterized protein vam6/Vps39-like protein vam6/Vps39-like protein vam6/Vps39-like protein vacuolar sorting protein 39 vam6/Vps39-like protein vacuolar sorting protein 39 vacuolar sorting protein 39
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 4
ath04148 Efferocytosis 4
ath04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 4
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
ppo00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04148 Efferocytosis 2
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 7
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 9
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit04144 Endocytosis 2
cit00510 N-Glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829815 100775609 100805342 101260684 101266347 4333909 100275187 103835541 103862479 100265014 7473176 18099277 11430244 123095899 123090874 123447516 107913068 121209709 106411049 106389810 5723659 8062271 102580804 102600688 102626538 100840876 107769880 107777091
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