ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	107058820	pentatricopeptide repeat-containing protein At5g56310-like
sot-r.1	107059004	pentatricopeptide repeat-containing protein At2g36730
sot-r.1	107059005	pentatricopeptide repeat-containing protein At2g36730-like
sot-r.1	107059009	pentatricopeptide repeat-containing protein At5g56310-like
sly-u.5	101257703	pentatricopeptide repeat-containing protein At3g62890
sly-u.5	101245194	pentatricopeptide repeat-containing protein At4g21065-like
nta-r.1	107815119	pentatricopeptide repeat-containing protein At3g62890
nta-r.1	107788854	pentatricopeptide repeat-containing protein At5g66520-like
nta-r.1	107788715	pentatricopeptide repeat-containing protein At3g62890-like
ath-u.5	AT3G62890	Pentatricopeptide repeat (PPR) superfamily protein
gma-u.5	102662618	pentatricopeptide repeat-containing protein At3g62890
gma-u.5	100798950	pentatricopeptide repeat-containing protein At4g21065
bra-r.6	103830373	pentatricopeptide repeat-containing protein At3g62890
mtr-u.5	120577581	pentatricopeptide repeat-containing protein At4g21065
bna-r.1	106353326	pentatricopeptide repeat-containing protein At3g62890
cit-r.1	102621080	pentatricopeptide repeat-containing protein At5g66520-like
osa-u.5	4328404	pentatricopeptide repeat-containing protein At4g21065
zma-u.5	100193546	Pentatricopeptide repeat-containing protein
hvu-r.1	123404502	pentatricopeptide repeat-containing protein At4g21065-like
bdi-r.1	100843058	pentatricopeptide repeat-containing protein At5g56310

Annotation

functional annotation

KEGG

GO BP

GO:0009451 [list] [network] RNA modification

(378 genes)

IEA

GO CC

GO MF

GO:0003723 [list] [network] RNA binding	(1335 genes)	IEA
GO:0005515 [list] [network] protein binding	(4214 genes)	IEA

Protein

XP_015160482.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, extr 1, pero 1

(predict for XP_015160482.1)

Subcellular
localization
TargetP

other 5

(predict for XP_015160482.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 107058820	sot-r.1 for 107059004	sot-r.1 for 107059005	sot-r.1 for 107059009	sly-u.5 for 101257703	sly-u.5 for 101245194	nta-r.1 for 107815119	nta-r.1 for 107788854	nta-r.1 for 107788715	ath-u.5 for AT3G62890	gma-u.5 for 102662618	gma-u.5 for 100798950	bra-r.6 for 103830373	mtr-u.5 for 120577581	bna-r.1 for 106353326	cit-r.1 for 102621080	osa-u.5 for 4328404	zma-u.5 for 100193546	hvu-r.1 for 123404502	bdi-r.1 for 100843058

Ortholog

Ortholog ID: 8069

Species	sot	sot	sot	sly	sly	nta	nta	nta	ath	gma	gma	bra	mtr	bna	cit	osa	zma	hvu	bdi
Symbol	LOC107059004	LOC107059005	LOC102600737	LOC101257703	LOC101245194	LOC107788854	LOC107788715	LOC107826186	AT3G62890	LOC102662618	LOC100798950	LOC103830373	LOC120577581	LOC106353326	LOC102621080	LOC4328404	LOC100193546	LOC123404502	LOC100843058
Function^*	pentatricopeptide repeat-containing protein At2g36730	pentatricopeptide repeat-containing protein At2g36730-like	pentatricopeptide repeat-containing protein At3g62890	pentatricopeptide repeat-containing protein At3g62890	pentatricopeptide repeat-containing protein At4g21065-like	pentatricopeptide repeat-containing protein At5g66520-like	pentatricopeptide repeat-containing protein At3g62890-like	pentatricopeptide repeat-containing protein At5g66520-like	Pentatricopeptide repeat (PPR) superfamily protein	pentatricopeptide repeat-containing protein At3g62890	pentatricopeptide repeat-containing protein At4g21065	pentatricopeptide repeat-containing protein At3g62890	pentatricopeptide repeat-containing protein At4g21065	pentatricopeptide repeat-containing protein At3g62890	pentatricopeptide repeat-containing protein At5g66520-like	pentatricopeptide repeat-containing protein At4g21065	Pentatricopeptide repeat-containing protein	pentatricopeptide repeat-containing protein At4g21065-like	pentatricopeptide repeat-containing protein At5g56310
Coexmap	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.
Coexpression	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.	Please wait a moment.
KEGG Info
Expression	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern	Expression pattern
Entrez Gene ID^*	107059004	107059005	102600737	101257703	101245194	107788854	107788715	107826186	825464	102662618	100798950	103830373	120577581	106353326	102621080	4328404	100193546	123404502	100843058

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107058820 (sot-r.1 coexpression data)

Top 50 enrichment test to 107058820 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	mtr	bna	cit	osa	zma	hvu	bdi	sbi	tae	vvi	ppo	ghi	cre
Paralog	4	2	3	1	2	1	1	1	1	1	1	1	1	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107058820 (sot-r.1 coexpression data)

Top 50 enrichment test to 107058820 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**