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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106359669   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bna-r.1   106373242   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bna-r.1   106400172   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bra-r.6   103861005   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bra-r.6   117125638   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9-like 
 ath-u.5   LSH9   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 

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Top 50 coexpressed genes to 106359669 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106359669 (bna-r.1 coexpression data)

CoexMap"106359669"


bnaLOC106359669 | Entrez gene ID : 106359669    
Species bna bra ath osa sot sly cit ppo ghi bdi sbi gma mtr tae hvu vvi zma cre nta
Paralog 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (62 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (379 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013654782.2 [sequence] [blastp]
XP_048594692.1 [sequence] [blastp]
XP_048594693.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_013654782.2)
nucl 9  (predict for XP_048594692.1)
nucl 9  (predict for XP_048594693.1)
Subcellular
localization
TargetP
chlo 8,  other 4  (predict for XP_013654782.2)
chlo 8,  other 4  (predict for XP_048594692.1)
chlo 8,  other 4  (predict for XP_048594693.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106359669
bna-r.1
for
106373242
bna-r.1
for
106400172
bra-r.6
for
103861005
bra-r.6
for
117125638
ath-u.5
for
LSH9


Ortholog ID: 19464
Species bna bna bna bra bra ath
Symbol LOC106359669 LOC106373242 LOC106400172 LOC103861005 LOC117125638 LSH9
Function* protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9-like LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Coexmap

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Coexpression

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KEGG Info
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106359669 106373242 106400172 103861005 117125638 28720146
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