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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LSH9   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-r.7   LSH9   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-e.2   LSH9   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 bra-r.6   103861005   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bra-r.6   117125638   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9-like 
 bna-r.1   106359669   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bna-r.1   106373242   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 
 bna-r.1   106400172   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 

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Top 50 coexpressed genes to LSH9 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LSH9 (ath-u.5 coexpression data)

CoexMap"28720146"


athLSH9 | Entrez gene ID : 28720146      
Species ath bra bna cre vvi ppo mtr hvu tae osa gma zma sly ghi cit sbi nta bdi sot
Paralog 3 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (14 genes)  ISS  
GO:0090698 [list] [network] post-embryonic plant morphogenesis  (222 genes)  ISS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM ISS  
GO MF
Protein NP_001319986.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001319986.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_001319986.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LSH9
ath-r.7
for
LSH9
ath-e.2
for
LSH9
bra-r.6
for
103861005
bra-r.6
for
117125638
bna-r.1
for
106359669
bna-r.1
for
106373242
bna-r.1
for
106400172


Ortholog ID: 19464
Species ath bra bra bna bna bna
Symbol LSH9 LOC103861005 LOC117125638 LOC106359669 LOC106373242 LOC106400172
Function* LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9
Coexmap

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Coexpression

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KEGG Info
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 28720146 103861005 117125638 106359669 106373242 106400172
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