ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106451688	telomere repeat-binding factor 1-like
bna-r.1	106418871	telomere repeat-binding factor 4-like
bna-r.1	111213405	telomere repeat-binding factor 2-like
bna-r.1	106346860	telomere repeat-binding factor 4-like
bra-r.6	103842747	telomere repeat-binding factor 4
bra-r.6	103874040	telomere repeat-binding factor 2
bra-r.6	103871379	telomere repeat-binding factor 1
ath-u.5	AT1G17520	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G72740	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G54260	winged-helix DNA-binding transcription factor family protein
ghi-r.1	107886936	telomere repeat-binding factor 1
ghi-r.1	107899264	telomere repeat-binding factor 2
ghi-r.1	107906085	telomere repeat-binding factor 4
cit-r.1	102620018	telomere repeat-binding factor 4
cit-r.1	102620353	single myb histone 4-like
cit-r.1	102629981	telomere repeat-binding factor 1
gma-u.5	MYB55	MYB transcription factor
gma-u.5	100779583	telomere repeat-binding factor 2
gma-u.5	100780698	telomere repeat-binding factor 1
vvi-u.5	100261713	telomere repeat-binding factor 1
vvi-u.5	100254369	telomere repeat-binding factor 4
vvi-u.5	104880293	proline-rich receptor-like protein kinase PERK10
ppo-u.5	7484658	telomere repeat-binding factor 4
ppo-u.5	7497744	telomere repeat-binding factor 2
ppo-u.5	7470752	telomere repeat-binding factor 1
mtr-u.5	11413893	serine/arginine-rich-splicing factor SR34
mtr-u.5	11416450	telomere repeat-binding factor 2
mtr-u.5	11421244	telomere repeat-binding factor 5
sly-u.5	101261899	single myb histone 4
sly-u.5	101263059	telomere repeat-binding factor 1
sly-u.5	101248266	single myb histone 6
sot-r.1	102587249	single myb histone 6-like
sot-r.1	102588044	telomere repeat-binding factor 1-like
nta-r.1	107775054	single myb histone 6
nta-r.1	107819671	telomere repeat-binding factor 1-like
nta-r.1	107802999	telomere repeat-binding factor 1-like
osa-u.5	4327680	single myb histone 4
osa-u.5	4324449	single myb histone 2
osa-u.5	4352780	single myb histone 6
zma-u.5	100274000	putative MYB-domain histone H1 family protein
zma-u.5	542124	single myb histone 6
zma-u.5	542125	single myb histone 4
tae-r.2	123070023	single myb histone 2
tae-r.2	123061756	single myb histone 4
tae-r.2	123070391	single myb histone 4
hvu-r.1	123444236	single myb histone 4
sbi-r.1	8056578	single myb histone 5
sbi-r.1	8069770	single myb histone 4
sbi-r.1	8057250	single myb histone 6
bdi-r.1	100831004	single myb histone 6-like
bdi-r.1	100830626	single myb histone 2
bdi-r.1	100828330	single myb histone 5
cre-r.1	CHLRE_04g221200v5	uncharacterized protein

Top 50 coexpressed genes to 106451688 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106451688 (bna-r.1 coexpression data)

CoexMap"106451688"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly

(137 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome

(197 genes)

IEA

GO MF

GO:0003691 [list] [network] double-stranded telomeric DNA binding

(29 genes)

IEA

Protein

XP_013749101.1 [sequence] [blastp]
XP_013749102.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_013749101.1)
nucl 10	(predict for XP_013749102.1)

Subcellular
localization
TargetP

other 7	(predict for XP_013749101.1)
other 7	(predict for XP_013749102.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106451688	bna-r.1 for 106418871	bna-r.1 for 111213405	bna-r.1 for 106346860	bra-r.6 for 103842747	bra-r.6 for 103874040	bra-r.6 for 103871379	ath-u.5 for AT1G17520	ath-u.5 for AT1G72740	ath-u.5 for AT1G54260	ghi-r.1 for 107886936	ghi-r.1 for 107899264	ghi-r.1 for 107906085	cit-r.1 for 102620018	cit-r.1 for 102620353	cit-r.1 for 102629981	gma-u.5 for MYB55	gma-u.5 for 100779583	gma-u.5 for 100780698	vvi-u.5 for 100261713	vvi-u.5 for 100254369	vvi-u.5 for 104880293	ppo-u.5 for 7484658	ppo-u.5 for 7497744	ppo-u.5 for 7470752	mtr-u.5 for 11413893	mtr-u.5 for 11416450	mtr-u.5 for 11421244	sly-u.5 for 101261899	sly-u.5 for 101263059	sly-u.5 for 101248266	sot-r.1 for 102587249	sot-r.1 for 102588044	nta-r.1 for 107775054	nta-r.1 for 107819671	nta-r.1 for 107802999	osa-u.5 for 4327680	osa-u.5 for 4324449	osa-u.5 for 4352780	zma-u.5 for 100274000	zma-u.5 for 542124	zma-u.5 for 542125	tae-r.2 for 123070023	tae-r.2 for 123061756	tae-r.2 for 123070391	hvu-r.1 for 123444236	sbi-r.1 for 8056578	sbi-r.1 for 8069770	sbi-r.1 for 8057250	bdi-r.1 for 100831004	bdi-r.1 for 100830626	bdi-r.1 for 100828330	cre-r.1 for CHLRE_04g221200v5

Ortholog

Ortholog ID: 463

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TRB2

TRB3

MYB85

Function^*