ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	104880293	proline-rich receptor-like protein kinase PERK10
vvi-r.5	104880293	proline-rich receptor-like protein kinase PERK10
vvi-u.5	100261713	telomere repeat-binding factor 1
vvi-u.5	100254369	telomere repeat-binding factor 4
ath-u.5	AT1G17520	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G72740	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G54260	winged-helix DNA-binding transcription factor family protein
gma-u.5	MYB55	MYB transcription factor
gma-u.5	100779583	telomere repeat-binding factor 2
gma-u.5	100780698	telomere repeat-binding factor 1
ppo-u.5	7464767	telomere repeat-binding factor 2
ppo-u.5	7469640	telomere repeat-binding factor 1
ppo-u.5	18107693	telomere repeat-binding factor 4
mtr-u.5	11416450	telomere repeat-binding factor 2
mtr-u.5	11421244	telomere repeat-binding factor 5
mtr-u.5	11434948	telomere repeat-binding factor 2
sly-u.5	101261899	single myb histone 4
sly-u.5	101263059	telomere repeat-binding factor 1
sly-u.5	101248266	single myb histone 6
osa-u.5	4327680	single myb histone 4
osa-u.5	4324449	single myb histone 2
osa-u.5	4352780	single myb histone 6
zma-u.5	100274000	putative MYB-domain histone H1 family protein
zma-u.5	542124	single myb histone 6
zma-u.5	542125	single myb histone 4

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly

(36 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome

(53 genes)

IEA

GO MF

GO:0003691 [list] [network] double-stranded telomeric DNA binding

(6 genes)

IEA

Protein

XP_010654886.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for XP_010654886.3)

Subcellular
localization
TargetP

chlo 7, other 5

(predict for XP_010654886.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 104880293	vvi-r.5 for 104880293	vvi-u.5 for 100261713	vvi-u.5 for 100254369	ath-u.5 for AT1G17520	ath-u.5 for AT1G72740	ath-u.5 for AT1G54260	gma-u.5 for MYB55	gma-u.5 for 100779583	gma-u.5 for 100780698	ppo-u.5 for 7464767	ppo-u.5 for 7469640	ppo-u.5 for 18107693	mtr-u.5 for 11416450	mtr-u.5 for 11421244	mtr-u.5 for 11434948	sly-u.5 for 101261899	sly-u.5 for 101263059	sly-u.5 for 101248266	osa-u.5 for 4327680	osa-u.5 for 4324449	osa-u.5 for 4352780	zma-u.5 for 100274000	zma-u.5 for 542124	zma-u.5 for 542125

Ortholog

Ortholog ID: 463

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100261713

TRB2

TRB3

MYB85

Function^*

telomere repeat-binding factor 1

Homeodomain-like/winged-helix DNA-binding family protein

telomere repeat binding factor 3

MYB transcription factor MYB85

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 1

telomere repeat-binding factor 5

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 1

telomere repeat-binding factor 2-like

telomere repeat-binding factor 2

telomere repeat-binding factor 1

telomere repeat-binding factor 4

single myb histone 6

telomere repeat-binding factor 4

single myb histone 6-like

single myb histone 6

telomere repeat-binding factor 1

single myb histone 4

single myb histone 6

putative MYB-domain histone H1 family protein

single myb histone 3

single myb histone 2

single myb histone 4

single myb histone 5-like

single myb histone 5

single myb histone 4

single myb histone 6-like

single myb histone 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	6
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	6
nta04075	Plant hormone signal transduction	3
nta00760	Nicotinate and nicotinamide metabolism	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	4
tae04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	4
tae04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	4
hvu04144	Endocytosis	3
hvu04145	Phagosome	2
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

100261713

836894

824147

778043

100779583

103872538

103835952

7497744

18107693

25486339

11436338

107920908

107906085

106424352

106415662

102625292

102629981

101263623

101248266

102589734

102587249

107775054

107784527

4327680

4352780

100274000

542123

123070023

123078482

123444236

123398474

8056578

8069770

100831004

100830626

5717751

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 104880293 (vvi-u.5 coexpression data)

Top 50 enrichment test to 104880293 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 104880293 (vvi-u.5 coexpression data)

Top 50 enrichment test to 104880293 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**