Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT3G54980   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   LOJ   LATERAL ORGAN JUNCTION 
 bra-r.6   103841410   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 bna-r.1   106412116   pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like 
 bna-r.1   106439871   pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like 
 ghi-r.1   107914253   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 ghi-r.1   107897594   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 cit-r.1   102609583   pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like 
 gma-u.5   100777321   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 vvi-u.5   100259391   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 ppo-u.5   7495762   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 mtr-u.5   11443262   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 sly-u.5   101252311   pentatricopeptide repeat-containing protein At3g54980, mitochondrial 
 sot-r.1   102596962   pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like 
 nta-r.1   107777250   uncharacterized LOC107777250 
 nta-r.1   107827183   uncharacterized LOC107827183 
 nta-r.1   107829376   uncharacterized LOC107829376 

close


Top 50 coexpressed genes to AT3G54980 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT3G54980 (ath-m.4.lig coexpression data)

CoexMap"824663"


athAT3G54980 | Entrez gene ID : 824663    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta cre hvu tae bdi osa zma sbi
Paralog 10 1 2 2 1 1 1 1 1 1 1 3 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001325869.1 [sequence] [blastp]
NP_191058.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto_mito 2  (predict for NP_001325869.1)
chlo 5,  mito 4,  cyto_mito 2  (predict for NP_191058.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001325869.1)
mito 8  (predict for NP_191058.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT3G54980
ath-u.5
for
AT3G54980
ath-r.7
for
AT3G54980
ath-m.9
for
AT3G54980
ath-e.2
for
AT3G54980
ath-m.4.bio
for
AT3G54980
ath-m.4.hor
for
AT3G54980
ath-m.4.str
for
AT3G54980
ath-m.4.tis
for
AT3G54980
ath-u.5
for
LOJ
bra-r.6
for
103841410
bna-r.1
for
106412116
bna-r.1
for
106439871
ghi-r.1
for
107914253
ghi-r.1
for
107897594
cit-r.1
for
102609583
gma-u.5
for
100777321
vvi-u.5
for
100259391
ppo-u.5
for
7495762
mtr-u.5
for
11443262
sly-u.5
for
101252311
sot-r.1
for
102596962
nta-r.1
for
107777250
nta-r.1
for
107827183
nta-r.1
for
107829376


Ortholog ID: 12645
Species ath ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta nta
Symbol AT3G54980 LOJ LOC103841410 LOC106412116 LOC106439871 LOC107914253 LOC107897594 LOC102609583 LOC100777321 LOC100259391 LOC7495762 LOC11443262 LOC101252311 LOC102596962 LOC107777250 LOC107827183 LOC107829376
Function* Pentatricopeptide repeat (PPR) superfamily protein LATERAL ORGAN JUNCTION pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like uncharacterized LOC107777250 uncharacterized LOC107827183 uncharacterized LOC107829376
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824663 818508 103841410 106412116 106439871 107914253 107897594 102609583 100777321 100259391 7495762 11443262 101252311 102596962 107777250 107827183 107829376
The preparation time of this page was 0.1 [sec].