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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-u.5   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-r.7   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-m.9   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-e.2   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-m.4.bio   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-m.4.hor   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-m.4.str   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-m.4.tis   RDUF2   zinc finger (C3HC4-type RING finger) family protein 
 ath-u.5   RHC2A   RING-H2 finger C2A 
 ath-u.5   RDUF1   zinc finger (C3HC4-type RING finger) family protein 
 bra-r.6   103867017   probable E3 ubiquitin-protein ligase RHC2A 
 bra-r.6   103851573   E3 ubiquitin-protein ligase RDUF2 
 bra-r.6   103845376   E3 ubiquitin-protein ligase RDUF2 
 bna-r.1   106420536   E3 ubiquitin-protein ligase RDUF2-like 
 bna-r.1   106418507   E3 ubiquitin-protein ligase RDUF2-like 
 bna-r.1   106390626   probable E3 ubiquitin-protein ligase RHC2A 
 ghi-r.1   107948908   probable E3 ubiquitin-protein ligase RHC2A 
 ghi-r.1   107889648   E3 ubiquitin-protein ligase RDUF2 
 ghi-r.1   107891067   probable E3 ubiquitin-protein ligase RHC2A 
 cit-r.1   102628945   E3 ubiquitin-protein ligase RDUF2 
 cit-r.1   102609491   E3 ubiquitin-protein ligase RDUF2-like 
 cit-r.1   102625091   probable E3 ubiquitin-protein ligase RHC2A 
 gma-u.5   100807324   probable E3 ubiquitin-protein ligase RHC2A 
 gma-u.5   100784364   probable E3 ubiquitin-protein ligase RHC2A 
 gma-u.5   100784822   E3 ubiquitin-protein ligase RDUF2 
 vvi-u.5   100265659   E3 ubiquitin-protein ligase RDUF1 
 vvi-u.5   100256404   probable E3 ubiquitin-protein ligase RHC2A 
 vvi-u.5   100244277   probable E3 ubiquitin-protein ligase RHC2A 
 ppo-u.5   7490384   probable E3 ubiquitin-protein ligase RHC2A 
 ppo-u.5   7485690   E3 ubiquitin-protein ligase RDUF1 
 ppo-u.5   7468627   E3 ubiquitin-protein ligase RDUF1 
 mtr-u.5   11419123   E3 ubiquitin-protein ligase RDUF2 
 mtr-u.5   25489325   probable E3 ubiquitin-protein ligase RHC2A 
 sly-u.5   101256882   probable E3 ubiquitin-protein ligase RHC2A 
 sly-u.5   101256865   probable E3 ubiquitin-protein ligase RHC2A 
 sot-r.1   102605063   E3 ubiquitin-protein ligase RING1-like 
 sot-r.1   102587426   E3 ubiquitin-protein ligase RING1 
 nta-r.1   107824926   putative E3 ubiquitin-protein ligase RHC2A 
 nta-r.1   107812906   E3 ubiquitin-protein ligase RDUF2 
 nta-r.1   107805544   E3 ubiquitin-protein ligase RDUF2 
 osa-u.5   4332393   E3 ubiquitin-protein ligase RDUF2 
 osa-u.5   4326393   probable E3 ubiquitin-protein ligase RHC2A 
 osa-u.5   4337586   E3 ubiquitin-protein ligase RDUF2 
 zma-u.5   100216907   putative RING zinc finger domain superfamily protein 
 zma-u.5   103637322   probable E3 ubiquitin-protein ligase RHC2A 
 zma-u.5   107546767   Putative RING zinc finger domain superfamily protein 
 tae-r.2   123072826   probable E3 ubiquitin-protein ligase RHC2A 
 tae-r.2   123080990   probable E3 ubiquitin-protein ligase RHC2A 
 hvu-r.1   123443564   probable E3 ubiquitin-protein ligase RHC2A 
 hvu-r.1   123441568   E3 ubiquitin-protein ligase RDUF1-like 
 hvu-r.1   123445686   probable E3 ubiquitin-protein ligase RHC2A 
 sbi-r.1   8067315   probable E3 ubiquitin-protein ligase RHC2A 
 sbi-r.1   8081514   E3 ubiquitin-protein ligase RDUF2 
 bdi-r.1   100825919   E3 ubiquitin-protein ligase RDUF1 
 bdi-r.1   100834239   E3 ubiquitin-protein ligase RDUF2 
 bdi-r.1   100821106   E3 ubiquitin-protein ligase RDUF2 

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Top 50 coexpressed genes to RDUF2 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RDUF2 (ath-m.4.lig coexpression data)

CoexMap"836074"


athRDUF2 | Entrez gene ID : 836074      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 3 3 3 3 2 2 2 3 3 3 2 3 2 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051865 [list] [network] protein autoubiquitination  (18 genes)  IDA  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_001331469.1 [sequence] [blastp]
NP_568910.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001331469.1)
chlo 6,  mito 2,  nucl 1,  extr 1  (predict for NP_568910.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_001331469.1)
other 5  (predict for NP_568910.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
RDUF2
ath-u.5
for
RDUF2
ath-r.7
for
RDUF2
ath-m.9
for
RDUF2
ath-e.2
for
RDUF2
ath-m.4.bio
for
RDUF2
ath-m.4.hor
for
RDUF2
ath-m.4.str
for
RDUF2
ath-m.4.tis
for
RDUF2
ath-u.5
for
RHC2A
ath-u.5
for
RDUF1
bra-r.6
for
103867017
bra-r.6
for
103851573
bra-r.6
for
103845376
bna-r.1
for
106420536
bna-r.1
for
106418507
bna-r.1
for
106390626
ghi-r.1
for
107948908
ghi-r.1
for
107889648
ghi-r.1
for
107891067
cit-r.1
for
102628945
cit-r.1
for
102609491
cit-r.1
for
102625091
gma-u.5
for
100807324
gma-u.5
for
100784364
gma-u.5
for
100784822
vvi-u.5
for
100265659
vvi-u.5
for
100256404
vvi-u.5
for
100244277
ppo-u.5
for
7490384
ppo-u.5
for
7485690
ppo-u.5
for
7468627
mtr-u.5
for
11419123
mtr-u.5
for
25489325
sly-u.5
for
101256882
sly-u.5
for
101256865
sot-r.1
for
102605063
sot-r.1
for
102587426
nta-r.1
for
107824926
nta-r.1
for
107812906
nta-r.1
for
107805544
osa-u.5
for
4332393
osa-u.5
for
4326393
osa-u.5
for
4337586
zma-u.5
for
100216907
zma-u.5
for
103637322
zma-u.5
for
107546767
tae-r.2
for
123072826
tae-r.2
for
123080990
hvu-r.1
for
123443564
hvu-r.1
for
123441568
hvu-r.1
for
123445686
sbi-r.1
for
8067315
sbi-r.1
for
8081514
bdi-r.1
for
100825919
bdi-r.1
for
100834239
bdi-r.1
for
100821106


Ortholog ID: 952
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi
Symbol RDUF2 RHC2A RDUF1 LOC103851573 LOC103845376 LOC103861302 LOC106420536 LOC125582106 LOC106347545 LOC107916821 LOC107942404 LOC107929601 LOC102628945 LOC102609491 LOC102625091 LOC100798563 LOC100804867 LOC100792874 LOC100265659 LOC100256404 LOC100244277 LOC7490384 LOC7468627 LOC7454941 LOC25489325 LOC11414430 LOC101256882 LOC101256865 LOC102605063 LOC102587426 LOC107824926 LOC107812906 LOC107795036 LOC4332393 LOC4337586 LOC100216907 LOC103637322 LOC103639315 LOC123072826 LOC123080990 LOC123097918 LOC123443564 LOC123441568 LOC123445686 LOC8067315 LOC8081514 LOC100825919 LOC100834239 LOC100821106
Function* zinc finger (C3HC4-type RING finger) family protein RING-H2 finger C2A zinc finger (C3HC4-type RING finger) family protein E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2-like E3 ubiquitin-protein ligase RDUF2-like E3 ubiquitin-protein ligase RDUF1-like probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1 probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2-like probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF1 probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RING1-like E3 ubiquitin-protein ligase RING1 putative E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF1-like E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2 putative RING zinc finger domain superfamily protein probable E3 ubiquitin-protein ligase RHC2A putative RING zinc finger domain superfamily protein probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF1-like probable E3 ubiquitin-protein ligase RHC2A probable E3 ubiquitin-protein ligase RHC2A E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF1 E3 ubiquitin-protein ligase RDUF2 E3 ubiquitin-protein ligase RDUF2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
ath00520 Amino sugar and nucleotide sugar metabolism 2
ath01240 Biosynthesis of cofactors 2
ath01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma00670 One carbon pool by folate 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836074 818556 823815 103851573 103845376 103861302 106420536 125582106 106347545 107916821 107942404 107929601 102628945 102609491 102625091 100798563 100804867 100792874 100265659 100256404 100244277 7490384 7468627 7454941 25489325 11414430 101256882 101256865 102605063 102587426 107824926 107812906 107795036 4332393 4337586 100216907 103637322 103639315 123072826 123080990 123097918 123443564 123441568 123445686 8067315 8081514 100825919 100834239 100821106
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