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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   TAF2   TBP-associated factor 2 
 ath-u.5   TAF2   TBP-associated factor 2 
 ath-r.7   TAF2   TBP-associated factor 2 
 ath-m.9   TAF2   TBP-associated factor 2 
 ath-e.2   TAF2   TBP-associated factor 2 
 ath-m.4.bio   TAF2   TBP-associated factor 2 
 ath-m.4.hor   TAF2   TBP-associated factor 2 
 ath-m.4.str   TAF2   TBP-associated factor 2 
 ath-m.4.tis   TAF2   TBP-associated factor 2 
 bra-r.6   103831869   transcription initiation factor TFIID subunit 2 
 bna-r.1   106354316   transcription initiation factor TFIID subunit 2 
 bna-r.1   111207081   transcription initiation factor TFIID subunit 2-like 
 ghi-r.1   121203593   transcription initiation factor TFIID subunit 2 
 ghi-r.1   121219274   transcription initiation factor TFIID subunit 2 
 ghi-r.1   107933166   transcription initiation factor TFIID subunit 2 
 cit-r.1   102613880   transcription initiation factor TFIID subunit 2 
 gma-u.5   100803129   transcription initiation factor TFIID subunit 2 
 gma-u.5   100792795   transcription initiation factor TFIID subunit 2 
 vvi-u.5   100266355   transcription initiation factor TFIID subunit 2 
 ppo-u.5   18105528   transcription initiation factor TFIID subunit 2 
 mtr-u.5   25481544   transcription initiation factor TFIID subunit 2 
 sly-u.5   101259036   transcription initiation factor TFIID subunit 2 
 sot-r.1   102578835   transcription initiation factor TFIID subunit 2 
 nta-r.1   107824526   transcription initiation factor TFIID subunit 2 
 nta-r.1   107811791   transcription initiation factor TFIID subunit 2 
 osa-u.5   4347029   transcription initiation factor TFIID subunit 2 
 zma-u.5   103649142   transcription initiation factor TFIID subunit 2 
 zma-u.5   103634102   transcription initiation factor TFIID subunit 2 
 tae-r.2   123111934   transcription initiation factor TFIID subunit 2 
 tae-r.2   123103714   transcription initiation factor TFIID subunit 2 
 tae-r.2   123121491   transcription initiation factor TFIID subunit 2 
 hvu-r.1   123396501   transcription initiation factor TFIID subunit 2 
 hvu-r.1   123428476   transcription initiation factor TFIID subunit 2-like 
 sbi-r.1   8055807   transcription initiation factor TFIID subunit 2 
 bdi-r.1   100821849   transcription initiation factor TFIID subunit 2 
 cre-r.1   CHLRE_13g583500v5   uncharacterized protein 

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Top 50 coexpressed genes to TAF2 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TAF2 (ath-m.4.lig coexpression data)

CoexMap"843733"


athTAF2 | Entrez gene ID : 843733      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 1 1 1 1 2 1 2 3 2 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001319379.1 [sequence] [blastp]
NP_001320977.1 [sequence] [blastp]
NP_177536.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  chlo 1,  cyto_plas 1  (predict for NP_001319379.1)
nucl 6,  cyto 4  (predict for NP_001320977.1)
nucl 6,  cyto 2,  cysk 1  (predict for NP_177536.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001319379.1)
other 6  (predict for NP_001320977.1)
other 8  (predict for NP_177536.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
TAF2
ath-u.5
for
TAF2
ath-r.7
for
TAF2
ath-m.9
for
TAF2
ath-e.2
for
TAF2
ath-m.4.bio
for
TAF2
ath-m.4.hor
for
TAF2
ath-m.4.str
for
TAF2
ath-m.4.tis
for
TAF2
bra-r.6
for
103831869
bna-r.1
for
106354316
bna-r.1
for
111207081
ghi-r.1
for
121203593
ghi-r.1
for
121219274
ghi-r.1
for
107933166
cit-r.1
for
102613880
gma-u.5
for
100803129
gma-u.5
for
100792795
vvi-u.5
for
100266355
ppo-u.5
for
18105528
mtr-u.5
for
25481544
sly-u.5
for
101259036
sot-r.1
for
102578835
nta-r.1
for
107824526
nta-r.1
for
107811791
osa-u.5
for
4347029
zma-u.5
for
103649142
zma-u.5
for
103634102
tae-r.2
for
123111934
tae-r.2
for
123103714
tae-r.2
for
123121491
hvu-r.1
for
123396501
hvu-r.1
for
123428476
sbi-r.1
for
8055807
bdi-r.1
for
100821849
cre-r.1
for
CHLRE_13g583500v5


Ortholog ID: 7854
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol TAF2 LOC103831869 LOC106354316 LOC111207081 LOC121203593 LOC121219274 LOC107953669 LOC102613880 LOC100803129 LOC100792795 LOC100266355 LOC18105528 LOC25481544 LOC101259036 LOC102578835 LOC107824526 LOC107811791 LOC4347029 LOC103649142 LOC103634102 LOC123111934 LOC123103714 LOC123121491 LOC123396501 LOC123428476 LOC8055807 LOC100821849 CHLRE_13g583500v5
Function* TBP-associated factor 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2-like transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2-like transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 3
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843733 103831869 106354316 111207081 121203593 121219274 107953669 102613880 100803129 100792795 100266355 18105528 25481544 101259036 102578835 107824526 107811791 4347029 103649142 103634102 123111934 123103714 123121491 123396501 123428476 8055807 100821849 5719359
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