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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18105528   transcription initiation factor TFIID subunit 2 
 ppo-r.4   18105528   transcription initiation factor TFIID subunit 2 
 gma-u.5   100803129   transcription initiation factor TFIID subunit 2 
 gma-u.5   100792795   transcription initiation factor TFIID subunit 2 
 mtr-u.5   25481544   transcription initiation factor TFIID subunit 2 
 ath-u.5   TAF2   TBP-associated factor 2 
 vvi-u.5   100266355   transcription initiation factor TFIID subunit 2 
 sly-u.5   101259036   transcription initiation factor TFIID subunit 2 
 osa-u.5   4347029   transcription initiation factor TFIID subunit 2 
 zma-u.5   103649142   transcription initiation factor TFIID subunit 2 
 zma-u.5   103634102   transcription initiation factor TFIID subunit 2 

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Top 50 coexpressed genes to 18105528 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18105528 (ppo-u.5 coexpression data)

CoexMap"18105528"


ppoLOC18105528 | Entrez gene ID : 18105528    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (36 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (22 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (18 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (109 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (170 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (442 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_024442756.1 [sequence] [blastp]
XP_024442757.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_024442756.1)
nucl 3,  chlo 2,  cyto 2,  cysk 2  (predict for XP_024442757.1)
Subcellular
localization
TargetP
other 9  (predict for XP_024442756.1)
other 7,  scret 3  (predict for XP_024442757.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18105528

.
ppo-r.4
for
18105528

.
gma-u.5
for
100803129

.
gma-u.5
for
100792795

.
mtr-u.5
for
25481544

.
ath-u.5
for
TAF2

.
vvi-u.5
for
100266355

.
sly-u.5
for
101259036

.
osa-u.5
for
4347029

.
zma-u.5
for
103649142

.
zma-u.5
for
103634102

.


Ortholog ID: 7854
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TAF2 LOC100803129 LOC100792795 LOC101259036 LOC4347029 LOC103649142 LOC103634102 LOC103831869 LOC100266355 LOC18105528 LOC25481544 LOC123121491 LOC123103714 LOC123428476 LOC123396501 LOC107953669 LOC121203593 LOC106354316 LOC111207081 CHLRE_13g583500v5 LOC8055807 LOC102578835 LOC102613880 LOC100821849 LOC107824526 LOC107811791
Function* TBP-associated factor 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2-like transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2-like uncharacterized protein transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2 transcription initiation factor TFIID subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 3
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843733 100803129 100792795 101259036 4347029 103649142 103634102 103831869 100266355 18105528 25481544 123121491 123103714 123428476 123396501 107953669 121203593 106354316 111207081 5719359 8055807 102578835 102613880 100821849 107824526 107811791
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