ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4347029	transcription initiation factor TFIID subunit 2
osa-r.6	4347029	transcription initiation factor TFIID subunit 2
osa-m.8	4347029	transcription initiation factor TFIID subunit 2
osa-e.1	4347029	transcription initiation factor TFIID subunit 2
zma-u.5	103649142	transcription initiation factor TFIID subunit 2
zma-u.5	103634102	transcription initiation factor TFIID subunit 2
ath-u.5	TAF2	TBP-associated factor 2
gma-u.5	100803129	transcription initiation factor TFIID subunit 2
gma-u.5	100792795	transcription initiation factor TFIID subunit 2
sly-u.5	101259036	transcription initiation factor TFIID subunit 2
vvi-u.5	100266355	transcription initiation factor TFIID subunit 2
ppo-u.5	18105528	transcription initiation factor TFIID subunit 2
mtr-u.5	25481544	transcription initiation factor TFIID subunit 2

Annotation

functional annotation

KEGG

osa03022 [list] [network] Basal transcription factors (47 genes)

GO BP

GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter

(35 genes)

IEA

GO CC

GO:0005669 [list] [network] transcription factor TFIID complex

(15 genes)

IEA

GO MF

GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity	(19 genes)	IEA
GO:0008237 [list] [network] metallopeptidase activity	(99 genes)	IEA
GO:0003682 [list] [network] chromatin binding	(130 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(363 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(840 genes)	IEA

Protein

XP_015611872.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, plas 1, cysk 1, cysk_plas 1, cyto_plas 1

(predict for XP_015611872.1)

Subcellular
localization
TargetP

other 9

(predict for XP_015611872.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4347029	osa-r.6 for 4347029	osa-m.8 for 4347029	osa-e.1 for 4347029	zma-u.5 for 103649142	zma-u.5 for 103634102	ath-u.5 for TAF2	gma-u.5 for 100803129	gma-u.5 for 100792795	sly-u.5 for 101259036	vvi-u.5 for 100266355	ppo-u.5 for 18105528	mtr-u.5 for 25481544

Ortholog

Ortholog ID: 7854

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

TAF2

Function^*

transcription initiation factor TFIID subunit 2

transcription initiation factor TFIID subunit 2-like

transcription initiation factor TFIID subunit 2

TBP-associated factor 2

transcription initiation factor TFIID subunit 2

transcription initiation factor TFIID subunit 2-like

transcription initiation factor TFIID subunit 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2
hvu03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	4
ath03040	Spliceosome	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03013	Nucleocytoplasmic transport	3
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00220	Arginine biosynthesis	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	4
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	3
bna03022	Basal transcription factors	2
bna03082	ATP-dependent chromatin remodeling	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	4

Expression

Expression pattern

Entrez Gene ID^*

4347029

123121491

123103714

123428476

123396501

100821849

103649142

103634102

8055807

843733

100803129

100792795

101259036

103831869

100266355

18105528

25481544

107953669

121203593

106354316

111207081

102578835

102613880

107824526

107811791

5719359

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4347029 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347029 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4347029 (osa-u.5 coexpression data)

Top 50 enrichment test to 4347029 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**