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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT3G06880   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   AT3G06880   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT3G06880   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103859188   putative E3 ubiquitin-protein ligase LIN-1 
 bna-r.1   106389025   putative E3 ubiquitin-protein ligase LIN-1 
 bna-r.1   106388928   putative E3 ubiquitin-protein ligase LIN-1 
 ghi-r.1   107931484   putative E3 ubiquitin-protein ligase LIN-1 
 ghi-r.1   107935153   putative E3 ubiquitin-protein ligase LIN-1 
 cit-r.1   102611723   putative E3 ubiquitin-protein ligase LIN-1 
 gma-u.5   100789287   putative E3 ubiquitin-protein ligase LIN-1 
 gma-u.5   100782870   putative E3 ubiquitin-protein ligase LIN-1 
 vvi-u.5   100258504   putative E3 ubiquitin-protein ligase LIN-2 
 ppo-u.5   18101809   putative E3 ubiquitin-protein ligase LIN-1 
 mtr-u.5   25488113   putative E3 ubiquitin-protein ligase LIN-1 
 sly-u.5   101256034   putative E3 ubiquitin-protein ligase LIN-1 
 sot-r.1   102584479   putative E3 ubiquitin-protein ligase LIN 
 nta-r.1   107814463   putative E3 ubiquitin-protein ligase LIN-1 
 nta-r.1   107798703   putative E3 ubiquitin-protein ligase LIN-1 
 osa-u.5   4338548   putative E3 ubiquitin-protein ligase LIN-1 
 zma-u.5   103630225   putative E3 ubiquitin-protein ligase LIN-1 
 tae-r.2   123181776   putative E3 ubiquitin-protein ligase LIN-1 
 tae-r.2   123129599   putative E3 ubiquitin-protein ligase LIN-1 
 tae-r.2   123053222   putative E3 ubiquitin-protein ligase LIN-1 
 hvu-r.1   123440615   putative E3 ubiquitin-protein ligase LIN-1 
 hvu-r.1   123408014   uncharacterized LOC123408014 
 sbi-r.1   8077901   putative E3 ubiquitin-protein ligase LIN-1 
 bdi-r.1   100827665   putative E3 ubiquitin-protein ligase LIN-1 

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Top 50 coexpressed genes to AT3G06880 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G06880 (ath-r.7 coexpression data)

CoexMap"819873"


athAT3G06880 | Entrez gene ID : 819873      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 2 1 2 1 1 1 1 1 2 1 1 3 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001189833.1 [sequence] [blastp]
NP_001326096.1 [sequence] [blastp]
NP_001326097.1 [sequence] [blastp]
NP_001326098.1 [sequence] [blastp]
NP_187344.5 [sequence] [blastp]
Subcellular
localization
wolf
extr 3,  vacu 2,  nucl 1,  cysk_nucl 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001189833.1)
extr 3,  nucl 1,  chlo 1,  vacu 1,  cysk_nucl 1,  cyto 1,  mito 1,  plas 1,  E.R._vacu 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001326096.1)
extr 3,  vacu 2,  nucl 1,  cysk_nucl 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001326097.1)
extr 3,  vacu 2,  nucl 1,  cysk_nucl 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001326098.1)
extr 3,  vacu 2,  nucl 1,  cysk_nucl 1,  chlo 1,  cyto 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1,  cyto_plas 1  (predict for NP_187344.5)
Subcellular
localization
TargetP
other 4,  scret 3  (predict for NP_001189833.1)
other 4,  scret 3  (predict for NP_001326096.1)
other 4,  scret 3  (predict for NP_001326097.1)
other 4,  scret 3  (predict for NP_001326098.1)
other 4,  scret 3  (predict for NP_187344.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT3G06880
ath-u.5
for
AT3G06880
ath-e.2
for
AT3G06880
bra-r.6
for
103859188
bna-r.1
for
106389025
bna-r.1
for
106388928
ghi-r.1
for
107931484
ghi-r.1
for
107935153
cit-r.1
for
102611723
gma-u.5
for
100789287
gma-u.5
for
100782870
vvi-u.5
for
100258504
ppo-u.5
for
18101809
mtr-u.5
for
25488113
sly-u.5
for
101256034
sot-r.1
for
102584479
nta-r.1
for
107814463
nta-r.1
for
107798703
osa-u.5
for
4338548
zma-u.5
for
103630225
tae-r.2
for
123181776
tae-r.2
for
123129599
tae-r.2
for
123053222
hvu-r.1
for
123440615
hvu-r.1
for
123408014
sbi-r.1
for
8077901
bdi-r.1
for
100827665


Ortholog ID: 9453
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi
Symbol AT3G06880 LOC103859188 LOC106389025 LOC106388928 LOC107931484 LOC107935153 LOC102611723 LOC100789287 LOC100782870 LOC100258504 LOC18101809 LOC25488113 LOC101256034 LOC102584479 LOC107814463 LOC107798703 LOC4338548 LOC103630225 LOC123181776 LOC123129599 LOC123053222 LOC123440615 LOC123408014 LOC8077901 LOC100827665
Function* Transducin/WD40 repeat-like superfamily protein putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-2 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1 uncharacterized LOC123408014 putative E3 ubiquitin-protein ligase LIN-1 putative E3 ubiquitin-protein ligase LIN-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 3
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00073 Cutin, suberine and wax biosynthesis 6
tae04146 Peroxisome 3
tae00010 Glycolysis / Gluconeogenesis 3
tae00071 Fatty acid degradation 3
tae00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00073 Cutin, suberine and wax biosynthesis 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00073 Cutin, suberine and wax biosynthesis 5
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 2
bdi00592 alpha-Linolenic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819873 103859188 106389025 106388928 107931484 107935153 102611723 100789287 100782870 100258504 18101809 25488113 101256034 102584479 107814463 107798703 4338548 103630225 123181776 123129599 123053222 123440615 123408014 8077901 100827665
The preparation time of this page was 2.3 [sec].