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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT4G39952   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT4G39952   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT4G39952   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103853980   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 ghi-r.1   107911631   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 ghi-r.1   107899825   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 gma-u.5   100780090   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 vvi-u.5   100242581   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 mtr-u.5   11437091   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 sly-u.5   101259109   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 sot-r.1   102595011   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 nta-r.1   107793676   pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like 
 nta-r.1   107759490   pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like 
 osa-u.5   112936052   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 zma-u.5   103641737   uncharacterized LOC103641737 
 tae-r.2   123045691   F-box protein At5g39250 
 hvu-r.1   123426936   pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like 
 bdi-r.1   100824044   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 

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Top 50 coexpressed genes to AT4G39952 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G39952 (ath-r.7 coexpression data)

CoexMap"830155"


athAT4G39952 | Entrez gene ID : 830155      
Species ath bra ghi gma vvi mtr sly sot nta osa zma tae hvu bdi bna sbi cit ppo cre
Paralog 3 1 2 1 1 1 1 1 2 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
Protein NP_680777.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto_mito 3,  chlo 2,  nucl 1  (predict for NP_680777.2)
Subcellular
localization
TargetP
mito 7  (predict for NP_680777.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT4G39952
ath-u.5
for
AT4G39952
ath-e.2
for
AT4G39952
bra-r.6
for
103853980
ghi-r.1
for
107911631
ghi-r.1
for
107899825
gma-u.5
for
100780090
vvi-u.5
for
100242581
mtr-u.5
for
11437091
sly-u.5
for
101259109
sot-r.1
for
102595011
nta-r.1
for
107793676
nta-r.1
for
107759490
osa-u.5
for
112936052
zma-u.5
for
103641737
tae-r.2
for
123045691
hvu-r.1
for
123426936
bdi-r.1
for
100824044


Ortholog ID: 11724
Species ath bra ghi ghi gma vvi mtr sly sot nta nta osa zma tae hvu bdi
Symbol AT4G39952 LOC103853980 LOC107911631 LOC107899825 LOC100780090 LOC100242581 LOC11437091 LOC101259109 LOC102595011 LOC107793676 LOC107759490 LOC112936052 LOC103641737 LOC123045691 LOC123426936 LOC100824044
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like pentatricopeptide repeat-containing protein At4g39952, mitochondrial uncharacterized LOC103641737 F-box protein At5g39250 pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like pentatricopeptide repeat-containing protein At4g39952, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 2
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830155 103853980 107911631 107899825 100780090 100242581 11437091 101259109 102595011 107793676 107759490 112936052 103641737 123045691 123426936 100824044
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