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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100242581   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 vvi-r.5   100242581   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 ath-u.5   AT4G39952   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100780090   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 mtr-u.5   11437091   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 sly-u.5   101259109   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 osa-u.5   112936052   pentatricopeptide repeat-containing protein At4g39952, mitochondrial 
 zma-u.5   103641737   uncharacterized LOC103641737 

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Top 50 coexpressed genes to 100242581 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100242581 (vvi-u.5 coexpression data)

CoexMap"100242581"


vviLOC100242581 | Entrez gene ID : 100242581    
Species vvi ath gma mtr sly osa zma ppo hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010662158.1 [sequence] [blastp]
XP_010662160.1 [sequence] [blastp]
XP_010662161.1 [sequence] [blastp]
XP_010662162.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  mito 1,  E.R. 1  (predict for XP_010662158.1)
chlo 4,  nucl 2,  mito 1,  E.R. 1  (predict for XP_010662160.1)
chlo 4,  nucl 2,  mito 1,  E.R. 1  (predict for XP_010662161.1)
chlo 4,  nucl 2,  mito 1,  E.R. 1  (predict for XP_010662162.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_010662158.1)
mito 4  (predict for XP_010662160.1)
mito 4  (predict for XP_010662161.1)
mito 4  (predict for XP_010662162.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100242581

.
vvi-r.5
for
100242581

.
ath-u.5
for
AT4G39952

.
gma-u.5
for
100780090

.
mtr-u.5
for
11437091

.
sly-u.5
for
101259109

.
osa-u.5
for
112936052

.
zma-u.5
for
103641737

.


Ortholog ID: 11724
Species ath gma sly osa zma bra vvi mtr tae hvu ghi ghi sot bdi nta nta
Symbol AT4G39952 LOC100780090 LOC101259109 LOC112936052 LOC103641737 LOC103853980 LOC100242581 LOC11437091 LOC123045691 LOC123426936 LOC107899825 LOC107911631 LOC102595011 LOC100824044 LOC107793676 LOC107759490
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial uncharacterized LOC103641737 pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial F-box protein At5g39250 pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 2
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830155 100780090 101259109 112936052 103641737 103853980 100242581 11437091 123045691 123426936 107899825 107911631 102595011 100824044 107793676 107759490
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