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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-u.5   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.9   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-e.2   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.4.bio   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.4.hor   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.4.lig   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.4.str   GAF1   Polymerase/histidinol phosphatase-like protein 
 ath-m.4.tis   GAF1   Polymerase/histidinol phosphatase-like protein 
 bra-r.6   103845416   protein GAMETOPHYTE DEFECTIVE 1 
 bra-r.6   103851531   protein GAMETOPHYTE DEFECTIVE 1 
 bna-r.1   BNAC09G35310D   protein GAMETOPHYTE DEFECTIVE 1 
 bna-r.1   106412410   protein GAMETOPHYTE DEFECTIVE 1-like 
 bna-r.1   106385719   protein GAMETOPHYTE DEFECTIVE 1-like 
 ghi-r.1   107959072   protein GAMETOPHYTE DEFECTIVE 1 
 ghi-r.1   107906177   protein GAMETOPHYTE DEFECTIVE 1 
 cit-r.1   102614383   protein GAMETOPHYTE DEFECTIVE 1 
 gma-u.5   121172931   ubiquitin C-terminal hydrolase 13-like 
 gma-u.5   100776746   protein GAMETOPHYTE DEFECTIVE 1 
 vvi-u.5   100241609   protein GAMETOPHYTE DEFECTIVE 1 
 ppo-u.5   7488147   uncharacterized LOC7488147 
 mtr-u.5   11408905   uncharacterized LOC11408905 
 sly-u.5   101253090   uncharacterized LOC101253090 
 sot-r.1   102585350   uncharacterized LOC102585350 
 nta-r.1   107814819   uncharacterized LOC107814819 
 nta-r.1   107765292   uncharacterized LOC107765292 
 osa-u.5   4349529   uncharacterized LOC4349529 
 osa-u.5   9271052   uncharacterized LOC9271052 
 osa-u.5   4351650   protein GAMETOPHYTE DEFECTIVE 1 
 zma-u.5   100279258   uncharacterized LOC100279258 
 tae-r.2   123091729   uncharacterized LOC123091729 
 tae-r.2   123096712   uncharacterized LOC123096712 
 tae-r.2   123086297   uncharacterized LOC123086297 
 hvu-r.1   123448121   uncharacterized LOC123448121 
 sbi-r.1   8072894   uncharacterized LOC8072894 
 sbi-r.1   8079950   uncharacterized LOC8079950 
 bdi-r.1   100830772   uncharacterized LOC100830772 
 cre-r.1   CHLRE_02g088050v5   uncharacterized protein 

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Top 50 coexpressed genes to GAF1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GAF1 (ath-r.7 coexpression data)

CoexMap"836120"


athGAF1 | Entrez gene ID : 836120      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 3 1 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0048868 [list] [network] pollen tube development  (225 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001154789.1 [sequence] [blastp]
NP_001332678.1 [sequence] [blastp]
NP_001332679.1 [sequence] [blastp]
NP_200806.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_001154789.1)
nucl 8,  cyto 2  (predict for NP_001332678.1)
nucl 8,  cyto 1  (predict for NP_001332679.1)
nucl 6,  cyto 3  (predict for NP_200806.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001154789.1)
other 9  (predict for NP_001332678.1)
other 9  (predict for NP_001332679.1)
other 9  (predict for NP_200806.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
GAF1
ath-u.5
for
GAF1
ath-m.9
for
GAF1
ath-e.2
for
GAF1
ath-m.4.bio
for
GAF1
ath-m.4.hor
for
GAF1
ath-m.4.lig
for
GAF1
ath-m.4.str
for
GAF1
ath-m.4.tis
for
GAF1
bra-r.6
for
103845416
bra-r.6
for
103851531
bna-r.1
for
BNAC09G35310D
bna-r.1
for
106412410
bna-r.1
for
106385719
ghi-r.1
for
107959072
ghi-r.1
for
107906177
cit-r.1
for
102614383
gma-u.5
for
121172931
gma-u.5
for
100776746
vvi-u.5
for
100241609
ppo-u.5
for
7488147
mtr-u.5
for
11408905
sly-u.5
for
101253090
sot-r.1
for
102585350
nta-r.1
for
107814819
nta-r.1
for
107765292
osa-u.5
for
4349529
osa-u.5
for
9271052
osa-u.5
for
4351650
zma-u.5
for
100279258
tae-r.2
for
123091729
tae-r.2
for
123096712
tae-r.2
for
123086297
hvu-r.1
for
123448121
sbi-r.1
for
8072894
sbi-r.1
for
8079950
bdi-r.1
for
100830772
cre-r.1
for
CHLRE_02g088050v5


Ortholog ID: 7003
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa osa osa zma tae tae tae hvu sbi sbi bdi cre
Symbol GAF1 LOC103845416 LOC103851531 BNAC09G35310D LOC106412410 LOC106385719 LOC107959072 LOC107906177 LOC102614383 LOC121172931 LOC100776746 LOC100241609 LOC7488147 LOC11408905 LOC101253090 LOC102585350 LOC107814819 LOC107765292 LOC4349529 LOC9271052 LOC4351650 LOC100279258 LOC123091729 LOC123096712 LOC123086297 LOC123448121 LOC8072894 LOC8079950 LOC100830772 CHLRE_02g088050v5
Function* Polymerase/histidinol phosphatase-like protein protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1-like protein GAMETOPHYTE DEFECTIVE 1-like protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 ubiquitin C-terminal hydrolase 13-like protein GAMETOPHYTE DEFECTIVE 1 protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC7488147 uncharacterized LOC11408905 uncharacterized LOC101253090 uncharacterized LOC102585350 uncharacterized LOC107814819 uncharacterized LOC107765292 uncharacterized LOC4349529 uncharacterized LOC9271052 protein GAMETOPHYTE DEFECTIVE 1 uncharacterized LOC100279258 uncharacterized LOC123091729 uncharacterized LOC123096712 uncharacterized LOC123086297 uncharacterized LOC123448121 uncharacterized LOC8072894 uncharacterized LOC8079950 uncharacterized LOC100830772 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
ghi03013 Nucleocytoplasmic transport 6
ghi03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03013 Nucleocytoplasmic transport 3
ghi03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 7
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836120 103845416 103851531 106416691 106412410 106385719 107959072 107906177 102614383 121172931 100776746 100241609 7488147 11408905 101253090 102585350 107814819 107765292 4349529 9271052 4351650 100279258 123091729 123096712 123086297 123448121 8072894 8079950 100830772 5727432
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