ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.9	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-e.2	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.bio	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.hor	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.lig	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.str	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.tis	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103836512	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
bna-r.1	125577196	pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like
bna-r.1	106365686	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
ghi-r.1	107889204	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
ghi-r.1	107891578	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
cit-r.1	102609207	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
gma-u.5	100792726	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
vvi-u.5	100249599	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
ppo-u.5	7478495	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
mtr-u.5	112419508	pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like
mtr-u.5	11409652	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
sly-u.5	101256843	pentatricopeptide repeat-containing protein
sot-r.1	102587859	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
nta-r.1	107818941	pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like
nta-r.1	107789171	pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like
osa-u.5	4330860	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
zma-u.5	103654223	pentatricopeptide repeat-containing protein, chloroplastic-like
hvu-r.1	123401892	pentatricopeptide repeat-containing protein At1g05750, chloroplastic
bdi-r.1	100826046	pentatricopeptide repeat-containing protein At1g05750, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0009451 [list] [network] RNA modification

(230 genes)

IMP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

IDA ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_001322717.1 [sequence] [blastp]
NP_172066.3 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, cyto 1, plas 1, extr 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for NP_001322717.1)
chlo 7, nucl 1, cyto 1, plas 1, extr 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for NP_172066.3)

Subcellular
localization
TargetP

chlo 7	(predict for NP_001322717.1)
chlo 7	(predict for NP_172066.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for PDE247	ath-u.5 for PDE247	ath-m.9 for PDE247	ath-e.2 for PDE247	ath-m.4.bio for PDE247	ath-m.4.hor for PDE247	ath-m.4.lig for PDE247	ath-m.4.str for PDE247	ath-m.4.tis for PDE247	bra-r.6 for 103836512	bna-r.1 for 125577196	bna-r.1 for 106365686	ghi-r.1 for 107889204	ghi-r.1 for 107891578	cit-r.1 for 102609207	gma-u.5 for 100792726	vvi-u.5 for 100249599	ppo-u.5 for 7478495	mtr-u.5 for 112419508	mtr-u.5 for 11409652	sly-u.5 for 101256843	sot-r.1 for 102587859	nta-r.1 for 107818941	nta-r.1 for 107789171	osa-u.5 for 4330860	zma-u.5 for 103654223	hvu-r.1 for 123401892	bdi-r.1 for 100826046