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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100101527   starch synthase IIIb-1 precursor 
 zma-r.6   100101527   starch synthase IIIb-1 precursor 
 zma-u.5   100101528   starch synthase IIIb-2 precursor 
 zma-u.5   541657   dull endosperm 1 
 sbi-r.1   8066807   starch synthase 3, chloroplastic/amyloplastic 
 sbi-r.1   8085013   starch synthase 3, chloroplastic/amyloplastic 
 osa-u.5   9268758   soluble starch synthase 3a, chloroplastic/amyloplastic-like 
 osa-u.5   4337056   starch synthase 3, chloroplastic/amyloplastic 
 tae-r.2   542856   starch synthase 3, chloroplastic/amyloplastic 
 tae-r.2   123054641   starch synthase 3, chloroplastic/amyloplastic 
 tae-r.2   123191353   starch synthase 3, chloroplastic/amyloplastic 
 hvu-r.1   123427900   starch synthase 3, chloroplastic/amyloplastic-like 
 bdi-r.1   100821718   starch synthase 3, chloroplastic/amyloplastic 
 bdi-r.1   100825259   starch synthase 3, chloroplastic/amyloplastic 
 ath-u.5   SS3   starch synthase 3 
 gma-u.5   100797872   starch synthase 3, chloroplastic/amyloplastic 
 gma-u.5   100801729   starch synthase 3, chloroplastic/amyloplastic 
 sly-u.5   100316882   starch synthase III 
 bra-r.6   103871924   starch synthase 3, chloroplastic/amyloplastic 
 bra-r.6   103836215   starch synthase 3, chloroplastic/amyloplastic 
 vvi-u.5   100241917   starch synthase 3, chloroplastic/amyloplastic 
 ppo-u.5   7479050   starch synthase 3, chloroplastic/amyloplastic 
 mtr-u.5   25486162   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107905928   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107935387   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107925177   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106401299   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106362162   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106346422   starch synthase 3, chloroplastic/amyloplastic 
 sot-r.1   102577674   soluble starch synthase 
 cit-r.1   102629511   starch synthase 3, chloroplastic/amyloplastic 
 nta-r.1   107807810   soluble starch synthase 3, chloroplastic/amyloplastic 
 nta-r.1   107770809   soluble starch synthase 3, chloroplastic/amyloplastic 
 cre-r.1   CHLRE_06g282000v5   uncharacterized protein 
 cre-r.1   CHLRE_13g579598v5   uncharacterized protein 

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Top 50 coexpressed genes to 100101527 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100101527 (zma-u.5 coexpression data)

CoexMap""


zmaLOC100101527 | Entrez gene ID : 100101527      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 3 1 2 1 2 1 2 1 1 1 3 3 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function starch synthase IIIb-1 precursor
KEGG zma00500 [list] [network] Starch and sucrose metabolism (180 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (11 genes)  IEA  
GO:2001070 [list] [network] starch binding  (15 genes)  IEA  
Protein NP_001106015.2 [sequence] [blastp]
XP_008661280.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for NP_001106015.2)
nucl 8,  chlo 1  (predict for XP_008661280.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for NP_001106015.2)
chlo 6,  mito 5  (predict for XP_008661280.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100101527
zma-r.6
for
100101527
zma-u.5
for
100101528
zma-u.5
for
541657
sbi-r.1
for
8066807
sbi-r.1
for
8085013
osa-u.5
for
9268758
osa-u.5
for
4337056
tae-r.2
for
542856
tae-r.2
for
123054641
tae-r.2
for
123191353
hvu-r.1
for
123427900
bdi-r.1
for
100821718
bdi-r.1
for
100825259
ath-u.5
for
SS3
gma-u.5
for
100797872
gma-u.5
for
100801729
sly-u.5
for
100316882
bra-r.6
for
103871924
bra-r.6
for
103836215
vvi-u.5
for
100241917
ppo-u.5
for
7479050
mtr-u.5
for
25486162
ghi-r.1
for
107905928
ghi-r.1
for
107935387
ghi-r.1
for
107925177
bna-r.1
for
106401299
bna-r.1
for
106362162
bna-r.1
for
106346422
sot-r.1
for
102577674
cit-r.1
for
102629511
nta-r.1
for
107807810
nta-r.1
for
107770809
cre-r.1
for
CHLRE_06g282000v5
cre-r.1
for
CHLRE_13g579598v5

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Ortholog ID: 4811
Species zma zma zma sbi sbi osa osa tae tae tae hvu bdi bdi ath gma gma sly bra bra vvi ppo mtr ghi ghi ghi bna bna bna sot cit nta nta cre cre
Symbol LOC100101527 LOC100101528 LOC541657 LOC8066807 LOC8085013 LOC9268758 LOC4337056 LOC123054641 LOC123191353 LOC100136992 LOC123427900 LOC100821718 LOC100825259 SS3 LOC100797872 LOC100801729 LOC100316882 LOC103871924 LOC103836215 LOC100241917 LOC7479050 LOC25486162 LOC107905928 LOC107935387 LOC107925177 LOC106401299 LOC106362162 LOC106414998 LOC102577674 LOC102629511 LOC107807810 LOC107770809 CHLRE_06g282000v5 CHLRE_13g579598v5
Function* starch synthase IIIb-1 precursor starch synthase IIIb-2 precursor dull endosperm 1 starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3a, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3 starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase III starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic soluble starch synthase starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3, chloroplastic/amyloplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma04144 Endocytosis 4
zma05100 Bacterial invasion of epithelial cells 4
zma00350 Tyrosine metabolism 2
zma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
osa04626 Plant-pathogen interaction 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00500 Starch and sucrose metabolism 3
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 2
ath04075 Plant hormone signal transduction 2
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
bra00380 Tryptophan metabolism 2
bra00901 Indole alkaloid biosynthesis 2
bra00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00591 Linoleic acid metabolism 2
vvi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00620 Pyruvate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi04075 Plant hormone signal transduction 3
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 17
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00561 Glycerolipid metabolism 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 4
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00906 Carotenoid biosynthesis 2
bna00860 Porphyrin metabolism 2
bna00541 Biosynthesis of various nucleotide sugars 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 12
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 7
cre00520 Amino sugar and nucleotide sugar metabolism 4
cre01250 Biosynthesis of nucleotide sugars 4
cre01200 Carbon metabolism 3
cre00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100101527 100101528 541657 8066807 8085013 9268758 4337056 123054641 123191353 100136992 123427900 100821718 100825259 837716 100797872 100801729 100316882 103871924 103836215 100241917 7479050 25486162 107905928 107935387 107925177 106401299 106362162 106414998 102577674 102629511 107807810 107770809 5720939 5719299
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