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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107770809   soluble starch synthase 3, chloroplastic/amyloplastic 
 nta-r.1   107807810   soluble starch synthase 3, chloroplastic/amyloplastic 
 sly-u.5   100316882   starch synthase III 
 sot-r.1   102577674   soluble starch synthase 
 ath-u.5   SS3   starch synthase 3 
 gma-u.5   100801729   starch synthase 3, chloroplastic/amyloplastic 
 gma-u.5   100797872   starch synthase 3, chloroplastic/amyloplastic 
 bra-r.6   103836215   starch synthase 3, chloroplastic/amyloplastic 
 bra-r.6   103871924   starch synthase 3, chloroplastic/amyloplastic 
 vvi-u.5   100241917   starch synthase 3, chloroplastic/amyloplastic 
 ppo-u.5   7479050   starch synthase 3, chloroplastic/amyloplastic 
 mtr-u.5   25486162   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107925177   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107958271   starch synthase 3, chloroplastic/amyloplastic 
 ghi-r.1   107935387   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106346422   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106362162   starch synthase 3, chloroplastic/amyloplastic 
 bna-r.1   106401299   starch synthase 3, chloroplastic/amyloplastic 
 cit-r.1   102629511   starch synthase 3, chloroplastic/amyloplastic 
 osa-u.5   9268758   soluble starch synthase 3a, chloroplastic/amyloplastic-like 
 osa-u.5   4337056   starch synthase 3, chloroplastic/amyloplastic 
 zma-u.5   100101528   starch synthase IIIb-2 precursor 
 zma-u.5   100101527   starch synthase IIIb-1 precursor 
 zma-u.5   541657   dull endosperm 1 
 tae-r.2   100136992   starch synthase 3, chloroplastic/amyloplastic 
 tae-r.2   123190488   starch synthase 3, chloroplastic/amyloplastic 
 tae-r.2   542856   starch synthase 3, chloroplastic/amyloplastic 
 hvu-r.1   123427900   starch synthase 3, chloroplastic/amyloplastic-like 
 sbi-r.1   8066807   starch synthase 3, chloroplastic/amyloplastic 
 sbi-r.1   8085013   starch synthase 3, chloroplastic/amyloplastic 
 bdi-r.1   100821718   starch synthase 3, chloroplastic/amyloplastic 
 bdi-r.1   100825259   starch synthase 3, chloroplastic/amyloplastic 
 cre-r.1   CHLRE_06g282000v5   uncharacterized protein 
 cre-r.1   CHLRE_13g579598v5   uncharacterized protein 

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Top 50 coexpressed genes to 107770809 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107770809 (nta-r.1 coexpression data)

CoexMap""


ntaLOC107770809 | Entrez gene ID : 107770809      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 2 1 1 1 3 3 1 2 3 3 1 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function soluble starch synthase 3, chloroplastic/amyloplastic
KEGG nta00500 [list] [network] Starch and sucrose metabolism (286 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (12 genes)  IEA  
GO:2001070 [list] [network] starch binding  (19 genes)  IEA  
Protein XP_016445626.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  pero 4  (predict for XP_016445626.1)
Subcellular
localization
TargetP
other 4  (predict for XP_016445626.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107770809
nta-r.1
for
107807810
sly-u.5
for
100316882
sot-r.1
for
102577674
ath-u.5
for
SS3
gma-u.5
for
100801729
gma-u.5
for
100797872
bra-r.6
for
103836215
bra-r.6
for
103871924
vvi-u.5
for
100241917
ppo-u.5
for
7479050
mtr-u.5
for
25486162
ghi-r.1
for
107925177
ghi-r.1
for
107958271
ghi-r.1
for
107935387
bna-r.1
for
106346422
bna-r.1
for
106362162
bna-r.1
for
106401299
cit-r.1
for
102629511
osa-u.5
for
9268758
osa-u.5
for
4337056
zma-u.5
for
100101528
zma-u.5
for
100101527
zma-u.5
for
541657
tae-r.2
for
100136992
tae-r.2
for
123190488
tae-r.2
for
542856
hvu-r.1
for
123427900
sbi-r.1
for
8066807
sbi-r.1
for
8085013
bdi-r.1
for
100821718
bdi-r.1
for
100825259
cre-r.1
for
CHLRE_06g282000v5
cre-r.1
for
CHLRE_13g579598v5

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Ortholog ID: 4811
Species nta nta sly sot ath gma gma bra bra vvi ppo mtr ghi ghi ghi bna bna bna cit osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre cre
Symbol LOC107770809 LOC107807810 LOC100316882 LOC102577674 SS3 LOC100801729 LOC100797872 LOC103836215 LOC103871924 LOC100241917 LOC7479050 LOC25486162 LOC107925177 LOC107935387 LOC107905928 LOC106362162 LOC106401299 LOC106414998 LOC102629511 LOC9268758 LOC4337056 LOC100101528 LOC100101527 LOC541657 LOC100136992 LOC123054641 LOC123191353 LOC123427900 LOC8066807 LOC8085013 LOC100821718 LOC100825259 CHLRE_06g282000v5 CHLRE_13g579598v5
Function* soluble starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3, chloroplastic/amyloplastic starch synthase III soluble starch synthase starch synthase 3 starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3a, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase IIIb-2 precursor starch synthase IIIb-1 precursor dull endosperm 1 starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 12
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 2
ath04075 Plant hormone signal transduction 2
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
bra00380 Tryptophan metabolism 2
bra00901 Indole alkaloid biosynthesis 2
bra00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00591 Linoleic acid metabolism 2
vvi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00620 Pyruvate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 17
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi04075 Plant hormone signal transduction 3
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 4
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00561 Glycerolipid metabolism 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00906 Carotenoid biosynthesis 2
bna00860 Porphyrin metabolism 2
bna00541 Biosynthesis of various nucleotide sugars 2
bna00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
osa04626 Plant-pathogen interaction 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma04144 Endocytosis 4
zma05100 Bacterial invasion of epithelial cells 4
zma00350 Tyrosine metabolism 2
zma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00500 Starch and sucrose metabolism 3
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 7
cre00520 Amino sugar and nucleotide sugar metabolism 4
cre01250 Biosynthesis of nucleotide sugars 4
cre01200 Carbon metabolism 3
cre00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107770809 107807810 100316882 102577674 837716 100801729 100797872 103836215 103871924 100241917 7479050 25486162 107925177 107935387 107905928 106362162 106401299 106414998 102629511 9268758 4337056 100101528 100101527 541657 100136992 123054641 123191353 123427900 8066807 8085013 100821718 100825259 5720939 5719299
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