ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100193821	uncharacterized LOC100193821
zma-r.6	100193821	uncharacterized LOC100193821
zma-m.5	100193821	uncharacterized LOC100193821
zma-u.5	100193607	uncharacterized LOC100193607
sbi-r.1	110437015	mediator of RNA polymerase II transcription subunit 19a-like
osa-u.5	4333548	mediator of RNA polymerase II transcription subunit 19a
osa-u.5	4352784	mediator of RNA polymerase II transcription subunit 19a
tae-r.2	123113203	mediator of RNA polymerase II transcription subunit 19a
tae-r.2	123110302	probable mediator of RNA polymerase II transcription subunit 19b
tae-r.2	123104913	mediator of RNA polymerase II transcription subunit 19a
hvu-r.1	123395610	probable mediator of RNA polymerase II transcription subunit 19b
hvu-r.1	123452115	mediator of RNA polymerase II transcription subunit 19a-like
bdi-r.1	100827934	mediator of RNA polymerase II transcription subunit 19a
bdi-r.1	100845126	probable mediator of RNA polymerase II transcription subunit 19b
ath-u.5	MED19A	mediator of RNA polymerase II transcription subunit 19a-like protein
ath-u.5	AT5G19480	mediator of RNA polymerase II transcription subunit
gma-u.5	100801318	uncharacterized LOC100801318
gma-u.5	100814559	mediator of RNA polymerase II transcription subunit 19a
gma-u.5	100805870	probable mediator of RNA polymerase II transcription subunit 19b
sly-u.5	101248127	mediator of RNA polymerase II transcription subunit 19a
sly-u.5	101252781	mediator of RNA polymerase II transcription subunit 19a-like
sly-u.5	101264640	mediator of RNA polymerase II transcription subunit 19a
bra-r.6	103845748	probable mediator of RNA polymerase II transcription subunit 19b
bra-r.6	103846657	mediator of RNA polymerase II transcription subunit 19a
bra-r.6	103855961	mediator of RNA polymerase II transcription subunit 19a
vvi-u.5	100251197	mediator of RNA polymerase II transcription subunit 19a
vvi-u.5	100244629	mediator of RNA polymerase II transcription subunit 19a
ppo-u.5	7478594	mediator of RNA polymerase II transcription subunit 19a
ppo-u.5	18098039	mediator of RNA polymerase II transcription subunit 19a
mtr-u.5	25501695	probable mediator of RNA polymerase II transcription subunit 19b
mtr-u.5	25500747	mediator of RNA polymerase II transcription subunit 19a
ghi-r.1	107955372	mediator of RNA polymerase II transcription subunit 19a
ghi-r.1	107954723	mediator of RNA polymerase II transcription subunit 19a
ghi-r.1	107938170	mediator of RNA polymerase II transcription subunit 19a
bna-r.1	125584072	mediator of RNA polymerase II transcription subunit 19a-like
bna-r.1	106367874	probable mediator of RNA polymerase II transcription subunit 19b
bna-r.1	106371805	probable mediator of RNA polymerase II transcription subunit 19b
sot-r.1	102590761	mediator of RNA polymerase II transcription subunit 19a-like
sot-r.1	102593102	mediator of RNA polymerase II transcription subunit 19a-like
sot-r.1	102586902	mediator of RNA polymerase II transcription subunit 19a-like
cit-r.1	102627709	mediator of RNA polymerase II transcription subunit 19a-like
cit-r.1	102615093	mediator of RNA polymerase II transcription subunit 19a
nta-r.1	107765429	mediator of RNA polymerase II transcription subunit 19a-like
nta-r.1	107806368	putative mediator of RNA polymerase II transcription subunit 19b
nta-r.1	107806566	mediator of RNA polymerase II transcription subunit 19a

Top 50 coexpressed genes to 100193821 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100193821 (zma-u.5 coexpression data)

CoexMap"100193821"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(124 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(45 genes)

IEA

GO MF

GO:0008134 [list] [network] transcription factor binding	(34 genes)	IEA
GO:0003712 [list] [network] transcription coregulator activity	(148 genes)	IEA

Protein

NP_001353968.1 [sequence] [blastp]
XP_008656915.1 [sequence] [blastp]
XP_008657050.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 3, cysk_nucl 3, nucl_plas 3	(predict for NP_001353968.1)
nucl 6, mito 3, cysk_nucl 3, nucl_plas 3	(predict for XP_008656915.1)
nucl 8, cyto 1, mito 1, extr 1	(predict for XP_008657050.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001353968.1)
other 9	(predict for XP_008656915.1)
other 9	(predict for XP_008657050.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100193821	zma-r.6 for 100193821	zma-m.5 for 100193821	zma-u.5 for 100193607	sbi-r.1 for 110437015	osa-u.5 for 4333548	osa-u.5 for 4352784	tae-r.2 for 123113203	tae-r.2 for 123110302	tae-r.2 for 123104913	hvu-r.1 for 123395610	hvu-r.1 for 123452115	bdi-r.1 for 100827934	bdi-r.1 for 100845126	ath-u.5 for MED19A	ath-u.5 for AT5G19480	gma-u.5 for 100801318	gma-u.5 for 100814559	gma-u.5 for 100805870	sly-u.5 for 101248127	sly-u.5 for 101252781	sly-u.5 for 101264640	bra-r.6 for 103845748	bra-r.6 for 103846657	bra-r.6 for 103855961	vvi-u.5 for 100251197	vvi-u.5 for 100244629	ppo-u.5 for 7478594	ppo-u.5 for 18098039	mtr-u.5 for 25501695	mtr-u.5 for 25500747	ghi-r.1 for 107955372	ghi-r.1 for 107954723	ghi-r.1 for 107938170	bna-r.1 for 125584072	bna-r.1 for 106367874	bna-r.1 for 106371805	sot-r.1 for 102590761	sot-r.1 for 102593102	sot-r.1 for 102586902	cit-r.1 for 102627709	cit-r.1 for 102615093	nta-r.1 for 107765429	nta-r.1 for 107806368	nta-r.1 for 107806566

Ortholog

Ortholog ID: 2670

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

MED19A

Function^*

uncharacterized LOC100193821

uncharacterized LOC100193607

mediator of RNA polymerase II transcription subunit 19a-like