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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18098039   mediator of RNA polymerase II transcription subunit 19a 
 ppo-r.4   18098039   mediator of RNA polymerase II transcription subunit 19a 
 ppo-u.5   7478594   mediator of RNA polymerase II transcription subunit 19a 
 gma-u.5   100801318   uncharacterized LOC100801318 
 gma-u.5   100814559   mediator of RNA polymerase II transcription subunit 19a 
 gma-u.5   100805870   probable mediator of RNA polymerase II transcription subunit 19b 
 mtr-u.5   25500747   mediator of RNA polymerase II transcription subunit 19a 
 mtr-u.5   25501695   probable mediator of RNA polymerase II transcription subunit 19b 
 ath-u.5   MED19A   mediator of RNA polymerase II transcription subunit 19a-like protein 
 ath-u.5   AT5G19480   mediator of RNA polymerase II transcription subunit 
 vvi-u.5   100251197   mediator of RNA polymerase II transcription subunit 19a 
 vvi-u.5   100244629   mediator of RNA polymerase II transcription subunit 19a 
 sly-u.5   101248127   mediator of RNA polymerase II transcription subunit 19a 
 sly-u.5   101252781   mediator of RNA polymerase II transcription subunit 19a-like 
 sly-u.5   101264640   mediator of RNA polymerase II transcription subunit 19a 
 osa-u.5   4333548   mediator of RNA polymerase II transcription subunit 19a 
 osa-u.5   4352784   mediator of RNA polymerase II transcription subunit 19a 
 zma-u.5   100193821   uncharacterized LOC100193821 
 zma-u.5   100193607   uncharacterized LOC100193607 

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Top 50 coexpressed genes to 18098039 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18098039 (ppo-u.5 coexpression data)

CoexMap"18098039"


ppoLOC18098039 | Entrez gene ID : 18098039    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 3 2 2 2 3 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (159 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (44 genes)  IEA  
GO MF
GO:0008134 [list] [network] transcription factor binding  (23 genes)  IEA  
GO:0003712 [list] [network] transcription coregulator activity  (154 genes)  IEA  
Protein XP_006384719.1 [sequence] [blastp]
XP_024454721.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_006384719.1)
nucl 7,  cyto 1,  mito 1,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_024454721.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006384719.1)
other 8  (predict for XP_024454721.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18098039

.
ppo-r.4
for
18098039

.
ppo-u.5
for
7478594

.
gma-u.5
for
100801318

.
gma-u.5
for
100814559

.
gma-u.5
for
100805870

.
mtr-u.5
for
25500747

.
mtr-u.5
for
25501695

.
ath-u.5
for
MED19A

.
ath-u.5
for
AT5G19480

.
vvi-u.5
for
100251197

.
vvi-u.5
for
100244629

.
sly-u.5
for
101248127

.
sly-u.5
for
101252781

.
sly-u.5
for
101264640

.
osa-u.5
for
4333548

.
osa-u.5
for
4352784

.
zma-u.5
for
100193821

.
zma-u.5
for
100193607

.


Ortholog ID: 2670
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G19480 MED19A LOC100801318 LOC100818495 LOC101264640 LOC101248127 LOC4352784 LOC4333548 LOC100193821 LOC100193607 LOC103846657 LOC103855961 LOC100251197 LOC100244629 LOC7478594 LOC18098039 LOC25500747 LOC25501695 LOC123122727 LOC123159355 LOC123395610 LOC123452115 LOC107954723 LOC107955008 LOC106372357 LOC106424627 LOC110437015 LOC102586902 LOC102590761 LOC102615093 LOC102627709 LOC100827934 LOC100845126 LOC107780609 LOC107806566
Function* mediator of RNA polymerase II transcription subunit mediator of RNA polymerase II transcription subunit 19a-like protein uncharacterized LOC100801318 mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a uncharacterized LOC100193821 uncharacterized LOC100193607 mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a probable mediator of RNA polymerase II transcription subunit 19b mediator of RNA polymerase II transcription subunit 19a probable mediator of RNA polymerase II transcription subunit 19b probable mediator of RNA polymerase II transcription subunit 19b mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a-like mediator of RNA polymerase II transcription subunit 19a probable mediator of RNA polymerase II transcription subunit 19b mediator of RNA polymerase II transcription subunit 19a mediator of RNA polymerase II transcription subunit 19a
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
osa03018 RNA degradation 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 4
ghi00565 Ether lipid metabolism 4
ghi04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832068 831097 100801318 100818495 101264640 101248127 4352784 4333548 100193821 100193607 103846657 103855961 100251197 100244629 7478594 18098039 25500747 25501695 123122727 123159355 123395610 123452115 107954723 107955008 106372357 106424627 110437015 102586902 102590761 102615093 102627709 100827934 100845126 107780609 107806566
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