ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102593102	mediator of RNA polymerase II transcription subunit 19a-like
sot-r.1	102590761	mediator of RNA polymerase II transcription subunit 19a-like
sot-r.1	102586902	mediator of RNA polymerase II transcription subunit 19a-like
sly-u.5	101264640	mediator of RNA polymerase II transcription subunit 19a
sly-u.5	101252781	mediator of RNA polymerase II transcription subunit 19a-like
sly-u.5	101248127	mediator of RNA polymerase II transcription subunit 19a
nta-r.1	107823353	putative mediator of RNA polymerase II transcription subunit 19b
nta-r.1	107806566	mediator of RNA polymerase II transcription subunit 19a
nta-r.1	107794918	mediator of RNA polymerase II transcription subunit 19a
ath-u.5	MED19A	mediator of RNA polymerase II transcription subunit 19a-like protein
ath-u.5	AT5G19480	mediator of RNA polymerase II transcription subunit
gma-u.5	100814559	mediator of RNA polymerase II transcription subunit 19a
gma-u.5	100801318	uncharacterized LOC100801318
gma-u.5	100798195	mediator of RNA polymerase II transcription subunit 19a
bra-r.6	103855961	mediator of RNA polymerase II transcription subunit 19a
bra-r.6	103846657	mediator of RNA polymerase II transcription subunit 19a
bra-r.6	103845748	probable mediator of RNA polymerase II transcription subunit 19b
vvi-u.5	100251197	mediator of RNA polymerase II transcription subunit 19a
vvi-u.5	100244629	mediator of RNA polymerase II transcription subunit 19a
ppo-u.5	18098039	mediator of RNA polymerase II transcription subunit 19a
ppo-u.5	7478594	mediator of RNA polymerase II transcription subunit 19a
mtr-u.5	25500747	mediator of RNA polymerase II transcription subunit 19a
mtr-u.5	25501695	probable mediator of RNA polymerase II transcription subunit 19b
ghi-r.1	107938170	mediator of RNA polymerase II transcription subunit 19a
ghi-r.1	107955008	mediator of RNA polymerase II transcription subunit 19a
ghi-r.1	107954723	mediator of RNA polymerase II transcription subunit 19a
bna-r.1	106424627	mediator of RNA polymerase II transcription subunit 19a
bna-r.1	125584072	mediator of RNA polymerase II transcription subunit 19a-like
bna-r.1	106367874	probable mediator of RNA polymerase II transcription subunit 19b
cit-r.1	102615093	mediator of RNA polymerase II transcription subunit 19a
cit-r.1	102627709	mediator of RNA polymerase II transcription subunit 19a-like
osa-u.5	4333548	mediator of RNA polymerase II transcription subunit 19a
osa-u.5	4352784	mediator of RNA polymerase II transcription subunit 19a
zma-u.5	100193607	uncharacterized LOC100193607
zma-u.5	100193821	uncharacterized LOC100193821
tae-r.2	123122727	mediator of RNA polymerase II transcription subunit 19a
tae-r.2	123119336	probable mediator of RNA polymerase II transcription subunit 19b
tae-r.2	123159355	probable mediator of RNA polymerase II transcription subunit 19b
hvu-r.1	123395610	probable mediator of RNA polymerase II transcription subunit 19b
hvu-r.1	123452115	mediator of RNA polymerase II transcription subunit 19a-like
sbi-r.1	110437015	mediator of RNA polymerase II transcription subunit 19a-like
bdi-r.1	100827934	mediator of RNA polymerase II transcription subunit 19a
bdi-r.1	100845126	probable mediator of RNA polymerase II transcription subunit 19b

Top 50 coexpressed genes to 102593102 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102593102 (sot-r.1 coexpression data)

CoexMap"102593102"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(124 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(40 genes)

IEA

GO MF

GO:0008134 [list] [network] transcription factor binding	(20 genes)	IEA
GO:0003712 [list] [network] transcription coregulator activity	(127 genes)	IEA

Protein

XP_006344342.1 [sequence] [blastp]
XP_015162812.1 [sequence] [blastp]
XP_015162813.1 [sequence] [blastp]
XP_015162814.1 [sequence] [blastp]
XP_015162815.1 [sequence] [blastp]
XP_015162816.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_006344342.1)
nucl 9	(predict for XP_015162812.1)
nucl 9	(predict for XP_015162813.1)
nucl 9	(predict for XP_015162814.1)
nucl 9	(predict for XP_015162815.1)
nucl 9	(predict for XP_015162816.1)

Subcellular
localization
TargetP

other 7	(predict for XP_006344342.1)
other 7	(predict for XP_015162812.1)
other 7	(predict for XP_015162813.1)
other 7	(predict for XP_015162814.1)
other 7	(predict for XP_015162815.1)
other 7	(predict for XP_015162816.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102593102	sot-r.1 for 102590761	sot-r.1 for 102586902	sly-u.5 for 101264640	sly-u.5 for 101252781	sly-u.5 for 101248127	nta-r.1 for 107823353	nta-r.1 for 107806566	nta-r.1 for 107794918	ath-u.5 for MED19A	ath-u.5 for AT5G19480	gma-u.5 for 100814559	gma-u.5 for 100801318	gma-u.5 for 100798195	bra-r.6 for 103855961	bra-r.6 for 103846657	bra-r.6 for 103845748	vvi-u.5 for 100251197	vvi-u.5 for 100244629	ppo-u.5 for 18098039	ppo-u.5 for 7478594	mtr-u.5 for 25500747	mtr-u.5 for 25501695	ghi-r.1 for 107938170	ghi-r.1 for 107955008	ghi-r.1 for 107954723	bna-r.1 for 106424627	bna-r.1 for 125584072	bna-r.1 for 106367874	cit-r.1 for 102615093	cit-r.1 for 102627709	osa-u.5 for 4333548	osa-u.5 for 4352784	zma-u.5 for 100193607	zma-u.5 for 100193821	tae-r.2 for 123122727	tae-r.2 for 123119336	tae-r.2 for 123159355	hvu-r.1 for 123395610	hvu-r.1 for 123452115	sbi-r.1 for 110437015	bdi-r.1 for 100827934	bdi-r.1 for 100845126

Ortholog

Ortholog ID: 2670

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

MED19A

Function^*

mediator of RNA polymerase II transcription subunit 19a-like