ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100245024	cold shock protein 1
vvi-r.5	100245024	cold shock protein 1
ath-u.5	AT3G42860	zinc knuckle (CCHC-type) family protein
ath-u.5	AT5G13920	GRF zinc finger / Zinc knuckle protein
gma-u.5	100804614	uncharacterized LOC100804614
gma-u.5	100802558	uncharacterized LOC100802558
gma-u.5	100527087	putative GRF zinc finger protein
ppo-u.5	18109015	uncharacterized LOC18109015
ppo-u.5	18102133	uncharacterized LOC18102133
ppo-u.5	18095236	cold shock domain-containing protein 3
mtr-u.5	112416309	uncharacterized LOC112416309
mtr-u.5	112416361	uncharacterized LOC112416361
sly-u.5	101256221	uncharacterized LOC101256221
osa-u.5	4334351	uncharacterized LOC4334351
zma-u.5	103644140	DNA-binding protein HEXBP

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding	(811 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3261 genes)	IEA

Protein

XP_002264670.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_002264670.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002264670.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100245024	vvi-r.5 for 100245024	ath-u.5 for AT3G42860	ath-u.5 for AT5G13920	gma-u.5 for 100804614	gma-u.5 for 100802558	gma-u.5 for 100527087	ppo-u.5 for 18109015	ppo-u.5 for 18102133	ppo-u.5 for 18095236	mtr-u.5 for 112416309	mtr-u.5 for 112416361	sly-u.5 for 101256221	osa-u.5 for 4334351	zma-u.5 for 103644140

Ortholog

Ortholog ID: 4923

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

cold shock protein 1

GRF zinc finger / Zinc knuckle protein

zinc knuckle (CCHC-type) family protein

uncharacterized LOC100804614

putative GRF zinc finger protein

uncharacterized LOC103856039

DNA-binding protein HEXBP

uncharacterized LOC18109015

uncharacterized LOC18102133

uncharacterized LOC112416309

uncharacterized LOC112416361

DNA-binding protein HEXBP

DNA-binding protein HEXBP-like

cold shock protein 1

uncharacterized LOC106386738

uncharacterized LOC102607900

uncharacterized LOC127900460

uncharacterized LOC101256221

uncharacterized LOC107799124

uncharacterized LOC107797633

uncharacterized LOC4334351

DNA-binding protein HEXBP

DNA-binding protein HEXBP-like

cold shock domain-containing protein 3

DNA-binding protein HEXBP

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	5
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	2
sly03440	Homologous recombination	2
sly03460	Fanconi anemia pathway	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	3
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma04075	Plant hormone signal transduction	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100245024

831239

823332

100804614

100527087

103856039

103845042

18109015

18102133

112416309

112416361

107962951

107901775

106371363

106386738

102607900

127900460

101256221

107799124

107797633

4334351

103644140

123105321

123113583

123452584

8083913

100838417

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100245024 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100245024 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	2	3	3	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100245024 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100245024 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**