ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100245935	transcription factor ILR3
vvi-r.5	100245935	transcription factor ILR3
vvi-m.5	100245935	transcription factor ILR3
vvi-u.5	100251326	transcription factor bHLH104
vvi-u.5	100264856	transcription factor bHLH104
vvi-u.5	100258884	transcription factor ILR3
ath-u.5	bHLH34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	bHLH104	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	ILR3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
gma-u.5	100801742	transcription factor ILR3
gma-u.5	100790993	transcription factor ILR3
gma-u.5	100789655	transcription factor bHLH104
ppo-u.5	18101598	transcription factor bHLH104
ppo-u.5	7470923	transcription factor ILR3
ppo-u.5	7492418	transcription factor bHLH104
mtr-u.5	11409489	transcription factor ILR3
mtr-u.5	11408870	transcription factor bHLH115
mtr-u.5	11419849	transcription factor bHLH104
sly-u.5	101265602	transcription factor ILR3
sly-u.5	101264073	transcription factor ILR3-like
sly-u.5	101259956	transcription factor ILR3
osa-u.5	4338978	transcription factor ILR3
osa-u.5	4328080	transcription factor ILR3
osa-u.5	4343509	transcription factor ILR3
zma-u.5	103639990	transcription factor ILR3
zma-u.5	100280093	uncharacterized LOC100280093
zma-u.5	100282509	uncharacterized LOC100282509

Top 50 coexpressed genes to 100245935 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100245935 (vvi-u.5 coexpression data)

CoexMap"100245935"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006879 [list] [network] intracellular iron ion homeostasis	(17 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1359 genes)	IEA

GO CC

GO MF

GO:0046983 [list] [network] protein dimerization activity	(449 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(925 genes)	IEA

Protein

XP_002273184.2 [sequence] [blastp]
XP_010647171.1 [sequence] [blastp]
XP_019074104.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, pero 1, cysk 1, cyto_pero 1	(predict for XP_002273184.2)
nucl 7, cyto 1, extr 1, pero 1, cysk 1, cyto_pero 1	(predict for XP_010647171.1)
nucl 6, plas 1, E.R._plas 1, extr 1, pero 1, cysk 1	(predict for XP_019074104.1)

Subcellular
localization
TargetP

other 8	(predict for XP_002273184.2)
other 7	(predict for XP_010647171.1)
other 9	(predict for XP_019074104.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100245935	vvi-r.5 for 100245935	vvi-m.5 for 100245935	vvi-u.5 for 100251326	vvi-u.5 for 100264856	vvi-u.5 for 100258884	ath-u.5 for bHLH34	ath-u.5 for bHLH104	ath-u.5 for ILR3	gma-u.5 for 100801742	gma-u.5 for 100790993	gma-u.5 for 100789655	ppo-u.5 for 18101598	ppo-u.5 for 7470923	ppo-u.5 for 7492418	mtr-u.5 for 11409489	mtr-u.5 for 11408870	mtr-u.5 for 11419849	sly-u.5 for 101265602	sly-u.5 for 101264073	sly-u.5 for 101259956	osa-u.5 for 4338978	osa-u.5 for 4328080	osa-u.5 for 4343509	zma-u.5 for 103639990	zma-u.5 for 100280093	zma-u.5 for 100282509

Ortholog

Ortholog ID: 595

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100258884

LOC100264856

bHLH115

bHLH34

Function^*

transcription factor ILR3

transcription factor bHLH104

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

transcription factor ILR3-like

transcription factor bHLH115

transcription factor bHLH34

transcription factor ILR3

transcription factor bHLH104

transcription factor ILR3

transcription factor bHLH34

transcription factor ILR3

transcription factor ILR3-like

transcription factor bHLH104

transcription factor ILR3

transcription factor ILR3-like

transcription factor ILR3

uncharacterized LOC100280093

transcription factor ILR3

transcription factor ILR3-like

transcription factor ILR3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	4
ath00760	Nicotinate and nicotinamide metabolism	2
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	4
gma00071	Fatty acid degradation	3
gma00620	Pyruvate metabolism	3
gma00053	Ascorbate and aldarate metabolism	2
gma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00910	Nitrogen metabolism	2
bra00750	Vitamin B6 metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr00020	Citrate cycle (TCA cycle)	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	7
mtr00020	Citrate cycle (TCA cycle)	4
mtr01200	Carbon metabolism	4
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	6
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	6
ghi04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	6
nta00260	Glycine, serine and threonine metabolism	4
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2
nta00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	7
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00910	Nitrogen metabolism	5
osa01310	Nitrogen cycle	5
osa00195	Photosynthesis	3
osa00480	Glutathione metabolism	3
osa00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00020	Citrate cycle (TCA cycle)	4
tae01200	Carbon metabolism	4
tae01210	2-Oxocarboxylic acid metabolism	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	4
bdi03013	Nucleocytoplasmic transport	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04081	Hormone signaling	2
cre00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100258884

100264856

841529

821899

100813088

100803143

103828768

103844925

18095890

7492418

11409489

11445675

107939864

107942996

106449668

106390538

102623026

127899974

101248331

101247632

102584888

102584960

107816467

107780376

4338978

4344627

100280093

118476893

123158275

123044620

123425811

123407909

8081711

8072534

100822537

100832841

66053434

The preparation time of this page was 0.1 [sec].


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100245935 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100245935 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**