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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5  100246628  pentatricopeptide repeat-containing protein At5g27110 
 vvi-r.5  100246628  pentatricopeptide repeat-containing protein At5g27110 
 vvi-u.5  104878995  pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 ath-u.5  AT5G27110  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100817231  pentatricopeptide repeat-containing protein At5g27110 
 gma-u.5  100819187  pentatricopeptide repeat-containing protein At5g27110 
 mtr-u.5  11436008  pentatricopeptide repeat-containing protein At5g27110 
 sly-u.5  101257516  pentatricopeptide repeat-containing protein At5g27110 
 osa-u.5  4325920  pentatricopeptide repeat-containing protein At3g22690 

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Top 50 coexpressed genes to 100246628 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100246628 (vvi-u.5 coexpression data)

CoexMap"100246628"


vviLOC100246628 | Entrez gene ID : 100246628
Species vvi ath gma mtr sly osa hvu zma bna cit bra ghi ppo sbi bdi nta tae cre sot
Paralog 3 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002275537.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  mito 1,  vacu 1,  cysk 1,  chlo_mito 1,  nucl_plas 1  (predict for XP_002275537.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002275537.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

vvi-u.5
for
100246628


vvi-r.5
for
100246628


vvi-u.5
for
104878995


ath-u.5
for
AT5G27110


gma-u.5
for
100817231


gma-u.5
for
100819187


mtr-u.5
for
11436008


sly-u.5
for
101257516


osa-u.5
for
4325920



Ortholog ID: 12677
Species vvi vvi ath gma gma mtr ghi cit sly sot nta osa bdi
Symbol LOC100246628 LOC104878995 AT5G27110 LOC100817231 LOC100819187 LOC11436008 LOC107938359 LOC102612538 LOC101257516 LOC102600898 LOC142178834 LOC4325920 LOC100837674
Function* pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At3g09040, mitochondrial Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110-like pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At3g22690
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100246628 104878995 832769 100817231 100819187 11436008 107938359 102612538 101257516 102600898 142178834 4325920 100837674
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