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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1  102600898  pentatricopeptide repeat-containing protein At5g27110 
 sly-u.5  101257516  pentatricopeptide repeat-containing protein At5g27110 
 ath-u.5  AT5G27110  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100819187  pentatricopeptide repeat-containing protein At5g27110 
 gma-u.5  100817231  pentatricopeptide repeat-containing protein At5g27110 
 vvi-u.5  104878995  pentatricopeptide repeat-containing protein At3g09040, mitochondrial 
 vvi-u.5  100246628  pentatricopeptide repeat-containing protein At5g27110 
 mtr-u.5  11436008  pentatricopeptide repeat-containing protein At5g27110 
 osa-u.5  4325920  pentatricopeptide repeat-containing protein At3g22690 

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Top 50 coexpressed genes to 102600898 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102600898 (sot-r.1 coexpression data)

CoexMap"102600898"


sotLOC102600898 | Entrez gene ID : 102600898
Species sot sly ath gma vvi mtr osa nta bna ppo tae bdi bra sbi hvu cit zma cre ghi
Paralog 1 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (378 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (4917 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006345300.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1,  mito 1  (predict for XP_006345300.1)
Subcellular
localization
TargetP
other 2  (predict for XP_006345300.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

sot-r.1
for
102600898

.

sly-u.5
for
101257516

.

ath-u.5
for
AT5G27110

.

gma-u.5
for
100819187

.

gma-u.5
for
100817231

.

vvi-u.5
for
104878995

.

vvi-u.5
for
100246628

.

mtr-u.5
for
11436008

.

osa-u.5
for
4325920

.


Ortholog ID: 12677
Species ath gma gma sly osa vvi vvi mtr ghi sot cit bdi nta
Symbol AT5G27110 LOC100817231 LOC100819187 LOC101257516 LOC4325920 LOC100246628 LOC104878995 LOC11436008 LOC107938359 LOC102600898 LOC102612538 LOC100837674 LOC142178834
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At3g09040, mitochondrial pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At5g27110 pentatricopeptide repeat-containing protein At3g22690 pentatricopeptide repeat-containing protein At5g27110-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832769 100817231 100819187 101257516 4325920 100246628 104878995 11436008 107938359 102600898 102612538 100837674 142178834
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