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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100246653   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-r.5   100246653   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   EMB2768   Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 
 gma-u.5   100813016   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100795726   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   18105304   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25494107   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25491022   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101255211   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   100273682   uncharacterized LOC100273682 

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Top 50 coexpressed genes to 100246653 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100246653 (vvi-u.5 coexpression data)

CoexMap"100246653"


vviLOC100246653 | Entrez gene ID : 100246653      
Species vvi ath gma ppo mtr sly zma bdi hvu bra cit bna sbi ghi osa sot nta cre tae
Paralog 2 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00970 [list] [network] Aminoacyl-tRNA biosynthesis (494 genes)
GO BP
GO:0006437 [list] [network] tyrosyl-tRNA aminoacylation  (1 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (103 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (505 genes)  IEA  
GO:0005829 [list] [network] cytosol  (779 genes)  IEA  
GO MF
GO:0004831 [list] [network] tyrosine-tRNA ligase activity  (2 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
Protein XP_002265238.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002265238.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002265238.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100246653
vvi-r.5
for
100246653
ath-u.5
for
EMB2768
gma-u.5
for
100813016
gma-u.5
for
100795726
ppo-u.5
for
18105304
mtr-u.5
for
25494107
mtr-u.5
for
25491022
sly-u.5
for
101255211
zma-u.5
for
100273682


Ortholog ID: 8013
Species vvi ath gma gma bra ppo mtr mtr ghi ghi bna bna cit sly sot nta nta zma tae hvu sbi bdi bdi cre
Symbol LOC100246653 EMB2768 LOC100795726 LOC100813016 LOC103858981 LOC18105304 LOC25491022 LOC25494107 LOC107928115 LOC107933932 LOC106438948 LOC106387281 LOC102614209 LOC101255211 LOC102604688 LOC107800102 LOC107832553 LOC100273682 LOC123181012 LOC123430775 LOC8057469 LOC100835648 LOC100832707 CHLRE_13g606050v5
Function* tyrosine--tRNA ligase, chloroplastic/mitochondrial Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like tyrosine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized LOC100273682 tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit00290 Valine, leucine and isoleucine biosynthesis 3
cit00770 Pantothenate and CoA biosynthesis 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100246653 821282 100795726 100813016 103858981 18105304 25491022 25494107 107928115 107933932 106438948 106387281 102614209 101255211 102604688 107800102 107832553 100273682 123181012 123430775 8057469 100835648 100832707 5724689
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