ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100248444	protein LEO1 homolog
vvi-r.5	100248444	protein LEO1 homolog
vvi-m.5	100248444	protein LEO1 homolog
vvi-u.5	100260418	protein LEO1 homolog
vvi-u.5	104880100	probable protein phosphatase 2C 55
ath-u.5	VIP4	leo1-like family protein
gma-u.5	100810965	protein LEO1 homolog
gma-u.5	100791454	protein LEO1 homolog
ppo-u.5	7487124	protein LEO1 homolog
mtr-u.5	25488701	protein LEO1 homolog
mtr-u.5	25488702	protein LEO1 homolog
sly-u.5	101254888	protein LEO1 homolog
osa-u.5	107276186	protein LEO1 homolog
osa-u.5	4342220	protein LEO1 homolog
osa-u.5	4352631	protein LEO1 homolog
zma-u.5	103631885	protein LEO1 homolog
zma-u.5	100279518	Protein LEO1-like protein

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II	(19 genes)	IEA
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II	(24 genes)	IEA

GO CC

GO:0016593 [list] [network] Cdc73/Paf1 complex	(7 genes)	IEA
GO:0005634 [list] [network] nucleus	(2597 genes)	IEA

GO MF

GO:1990269 [list] [network] RNA polymerase II C-terminal domain phosphoserine binding

(3 genes)

IEA

Protein

XP_002280975.2 [sequence] [blastp]
XP_010663257.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5	(predict for XP_002280975.2)
nucl 9, cyto_nucl 5	(predict for XP_010663257.1)

Subcellular
localization
TargetP

other 8	(predict for XP_002280975.2)
other 8	(predict for XP_010663257.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100248444	vvi-r.5 for 100248444	vvi-m.5 for 100248444	vvi-u.5 for 100260418	vvi-u.5 for 104880100	ath-u.5 for VIP4	gma-u.5 for 100810965	gma-u.5 for 100791454	ppo-u.5 for 7487124	mtr-u.5 for 25488701	mtr-u.5 for 25488702	sly-u.5 for 101254888	osa-u.5 for 107276186	osa-u.5 for 4342220	osa-u.5 for 4352631	zma-u.5 for 103631885	zma-u.5 for 100279518

Ortholog

Ortholog ID: 4454

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VIP4

Function^*

protein LEO1 homolog

leo1-like family protein

protein LEO1 homolog

Protein LEO1-like protein

protein LEO1 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	5
gma03250	Viral life cycle - HIV-1	4
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	8
bna03015	mRNA surveillance pathway	2
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit03015	mRNA surveillance pathway	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa04120	Ubiquitin mediated proteolysis	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100260418

100248444

836236

100791454

100810965

103854937

103837369

7487124

25488701

25488702

107918353

121224466

106382196

106444917

102619104

101254888

102594311

107763529

107765147

4352631

107276186

103631885

100279518

123105068

123188845

123426362

123452293

8054529

100820835

5724910

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100248444 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100248444 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	1	2	1	2	1	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100248444 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100248444 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**