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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25488702   protein LEO1 homolog 
 mtr-r.5   25488702   protein LEO1 homolog 
 mtr-u.5   25488701   protein LEO1 homolog 
 gma-u.5   100810965   protein LEO1 homolog 
 gma-u.5   100791454   protein LEO1 homolog 
 ppo-u.5   7487124   protein LEO1 homolog 
 ath-u.5   VIP4   leo1-like family protein 
 vvi-u.5   100248444   protein LEO1 homolog 
 vvi-u.5   100260418   protein LEO1 homolog 
 vvi-u.5   104880100   probable protein phosphatase 2C 55 
 sly-u.5   101254888   protein LEO1 homolog 
 osa-u.5   107276186   protein LEO1 homolog 
 osa-u.5   4342220   protein LEO1 homolog 
 osa-u.5   4352631   protein LEO1 homolog 
 zma-u.5   100279518   Protein LEO1-like protein 
 zma-u.5   103631885   protein LEO1 homolog 

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Top 50 coexpressed genes to 25488702 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25488702 (mtr-u.5 coexpression data)

CoexMap"25488702"


mtrLOC25488702 | Entrez gene ID : 25488702      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 3 1 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (23 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (26 genes)  IEA  
GO CC
GO:0016593 [list] [network] Cdc73/Paf1 complex  (9 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:1990269 [list] [network] RNA polymerase II C-terminal domain phosphoserine binding  (5 genes)  IEA  
Protein XP_013459093.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_013459093.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013459093.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25488702

.
mtr-r.5
for
25488702

.
mtr-u.5
for
25488701

.
gma-u.5
for
100810965

.
gma-u.5
for
100791454

.
ppo-u.5
for
7487124

.
ath-u.5
for
VIP4

.
vvi-u.5
for
100248444

.
vvi-u.5
for
100260418

.
vvi-u.5
for
104880100

.
sly-u.5
for
101254888

.
osa-u.5
for
107276186

.
osa-u.5
for
4342220

.
osa-u.5
for
4352631

.
zma-u.5
for
100279518

.
zma-u.5
for
103631885

.


Ortholog ID: 4454
Species ath gma gma sly osa osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol VIP4 LOC100791454 LOC100810965 LOC101254888 LOC4352631 LOC107276186 LOC103631885 LOC100279518 LOC103854937 LOC103837369 LOC100260418 LOC100248444 LOC7487124 LOC25488701 LOC25488702 LOC123105068 LOC123188845 LOC123426362 LOC123452293 LOC107918353 LOC121224466 LOC106382196 LOC106444917 CHLRE_16g694204v5 LOC8054529 LOC102594311 LOC102619104 LOC100820835 LOC107763529 LOC107765147
Function* leo1-like family protein protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog Protein LEO1-like protein protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog uncharacterized protein protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog protein LEO1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03015 mRNA surveillance pathway 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836236 100791454 100810965 101254888 4352631 107276186 103631885 100279518 103854937 103837369 100260418 100248444 7487124 25488701 25488702 123105068 123188845 123426362 123452293 107918353 121224466 106382196 106444917 5724910 8054529 102594311 102619104 100820835 107763529 107765147
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