ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100250012	probable mediator of RNA polymerase II transcription subunit 26b
vvi-r.5	100250012	probable mediator of RNA polymerase II transcription subunit 26b
ath-u.5	AT3G10820	Transcription elongation factor (TFIIS) family protein
ath-u.5	AT5G05140	Transcription elongation factor (TFIIS) family protein
gma-u.5	100817835	probable mediator of RNA polymerase II transcription subunit 26b
gma-u.5	100799367	probable mediator of RNA polymerase II transcription subunit 26b
gma-u.5	100775579	probable mediator of RNA polymerase II transcription subunit 26b
bra-r.6	103855614	probable mediator of RNA polymerase II transcription subunit 26b
bra-r.6	103850571	probable mediator of RNA polymerase II transcription subunit 26b
ppo-u.5	7458912	probable mediator of RNA polymerase II transcription subunit 26b
ppo-u.5	7495686	probable mediator of RNA polymerase II transcription subunit 26b
mtr-u.5	11413295	probable mediator of RNA polymerase II transcription subunit 26b
ghi-r.1	121209483	probable mediator of RNA polymerase II transcription subunit 26b
ghi-r.1	107925887	probable mediator of RNA polymerase II transcription subunit 26b
bna-r.1	106440660	probable mediator of RNA polymerase II transcription subunit 26b
cit-r.1	102608342	probable mediator of RNA polymerase II transcription subunit 26b
sly-u.5	101243966	probable mediator of RNA polymerase II transcription subunit 26b
sly-u.5	101248344	probable mediator of RNA polymerase II transcription subunit 26b
sot-r.1	102586751	probable mediator of RNA polymerase II transcription subunit 26b
nta-r.1	107829408	putative mediator of RNA polymerase II transcription subunit 26b
nta-r.1	107792143	putative mediator of RNA polymerase II transcription subunit 26b
nta-r.1	107785567	putative mediator of RNA polymerase II transcription subunit 26b
osa-u.5	4338792	probable mediator of RNA polymerase II transcription subunit 26b
zma-u.5	100501416	uncharacterized LOC100501416
zma-u.5	100384760	uncharacterized LOC100384760
zma-u.5	100382505	uncharacterized LOC100382505
tae-r.2	123187763	probable mediator of RNA polymerase II transcription subunit 26b
tae-r.2	123182023	probable mediator of RNA polymerase II transcription subunit 26b
tae-r.2	123044004	probable mediator of RNA polymerase II transcription subunit 26b
hvu-r.1	123425058	probable mediator of RNA polymerase II transcription subunit 26b
hvu-r.1	123442966	probable mediator of RNA polymerase II transcription subunit 26b
sbi-r.1	8073096	probable mediator of RNA polymerase II transcription subunit 26b
sbi-r.1	8082605	probable mediator of RNA polymerase II transcription subunit 26b
sbi-r.1	110430301	probable mediator of RNA polymerase II transcription subunit 26b
bdi-r.1	100834194	probable mediator of RNA polymerase II transcription subunit 26a
bdi-r.1	100842292	probable mediator of RNA polymerase II transcription subunit 26b
cre-r.1	CHLRE_01g004850v5	uncharacterized protein

Top 50 coexpressed genes to 100250012 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100250012 (vvi-u.5 coexpression data)

CoexMap"100250012"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(2597 genes)

IEA

GO MF

Protein

XP_010653635.1 [sequence] [blastp]
XP_010653636.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 3	(predict for XP_010653635.1)
chlo 4, cyto 4, nucl 3	(predict for XP_010653636.1)

Subcellular
localization
TargetP

other 4, mito 3	(predict for XP_010653635.1)
other 4, mito 3	(predict for XP_010653636.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100250012	vvi-r.5 for 100250012	ath-u.5 for AT3G10820	ath-u.5 for AT5G05140	gma-u.5 for 100817835	gma-u.5 for 100799367	gma-u.5 for 100775579	bra-r.6 for 103855614	bra-r.6 for 103850571	ppo-u.5 for 7458912	ppo-u.5 for 7495686	mtr-u.5 for 11413295	ghi-r.1 for 121209483	ghi-r.1 for 107925887	bna-r.1 for 106440660	cit-r.1 for 102608342	sly-u.5 for 101243966	sly-u.5 for 101248344	sot-r.1 for 102586751	nta-r.1 for 107829408	nta-r.1 for 107792143	nta-r.1 for 107785567	osa-u.5 for 4338792	zma-u.5 for 100501416	zma-u.5 for 100384760	zma-u.5 for 100382505	tae-r.2 for 123187763	tae-r.2 for 123182023	tae-r.2 for 123044004	hvu-r.1 for 123425058	hvu-r.1 for 123442966	sbi-r.1 for 8073096	sbi-r.1 for 8082605	sbi-r.1 for 110430301	bdi-r.1 for 100834194	bdi-r.1 for 100842292	cre-r.1 for CHLRE_01g004850v5

Ortholog

Ortholog ID: 1972

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*