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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7458912   probable mediator of RNA polymerase II transcription subunit 26b 
 ppo-r.4   7458912   probable mediator of RNA polymerase II transcription subunit 26b 
 ppo-u.5   7495686   probable mediator of RNA polymerase II transcription subunit 26b 
 gma-u.5   100817835   probable mediator of RNA polymerase II transcription subunit 26b 
 gma-u.5   100799367   probable mediator of RNA polymerase II transcription subunit 26b 
 gma-u.5   100775579   probable mediator of RNA polymerase II transcription subunit 26b 
 mtr-u.5   11413295   probable mediator of RNA polymerase II transcription subunit 26b 
 ath-u.5   AT3G10820   Transcription elongation factor (TFIIS) family protein 
 ath-u.5   AT5G05140   Transcription elongation factor (TFIIS) family protein 
 vvi-u.5   100250012   probable mediator of RNA polymerase II transcription subunit 26b 
 sly-u.5   101243966   probable mediator of RNA polymerase II transcription subunit 26b 
 sly-u.5   101248344   probable mediator of RNA polymerase II transcription subunit 26b 
 osa-u.5   4338792   probable mediator of RNA polymerase II transcription subunit 26b 
 zma-u.5   100501416   uncharacterized LOC100501416 
 zma-u.5   100384760   uncharacterized LOC100384760 
 zma-u.5   100382505   uncharacterized LOC100382505 

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Top 50 coexpressed genes to 7458912 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7458912 (ppo-u.5 coexpression data)

CoexMap"7458912"


ppoLOC7458912 | Entrez gene ID : 7458912    
Species ppo gma mtr ath vvi sly osa zma ghi cit tae bdi sbi cre bra hvu nta bna sot
Paralog 3 3 1 2 1 2 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
Protein XP_002323230.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1  (predict for XP_002323230.3)
Subcellular
localization
TargetP
other 6  (predict for XP_002323230.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7458912

.
ppo-r.4
for
7458912

.
ppo-u.5
for
7495686

.
gma-u.5
for
100817835

.
gma-u.5
for
100799367

.
gma-u.5
for
100775579

.
mtr-u.5
for
11413295

.
ath-u.5
for
AT3G10820

.
ath-u.5
for
AT5G05140

.
vvi-u.5
for
100250012

.
sly-u.5
for
101243966

.
sly-u.5
for
101248344

.
osa-u.5
for
4338792

.
zma-u.5
for
100501416

.
zma-u.5
for
100384760

.
zma-u.5
for
100382505

.


Ortholog ID: 1972
Species ath ath gma gma sly osa osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol AT3G10820 AT5G05140 LOC100799367 LOC100775579 LOC101243966 LOC4344077 LOC4338792 LOC100278816 LOC100382505 LOC103850571 LOC100250012 LOC7495686 LOC7458912 LOC11413295 LOC123132933 LOC123187763 LOC123442966 LOC123425058 LOC107925887 LOC121209483 LOC106422606 CHLRE_01g004850v5 LOC110430301 LOC8073096 LOC102586751 LOC102608342 LOC100842292 LOC107792143 LOC107832137
Function* Transcription elongation factor (TFIIS) family protein Transcription elongation factor (TFIIS) family protein probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b putative mediator of RNA polymerase II transcription subunit 26b uncharacterized LOC100382505 probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b uncharacterized protein probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b probable mediator of RNA polymerase II transcription subunit 26b putative mediator of RNA polymerase II transcription subunit 26b putative mediator of RNA polymerase II transcription subunit 26b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
ath00562 Inositol phosphate metabolism 2
ath01250 Biosynthesis of nucleotide sugars 2
ath00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00561 Glycerolipid metabolism 2
sbi00564 Glycerophospholipid metabolism 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04130 SNARE interactions in vesicular transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820251 830396 100799367 100775579 101243966 4344077 4338792 100278816 100382505 103850571 100250012 7495686 7458912 11413295 123132933 123187763 123442966 123425058 107925887 121209483 106422606 66051920 110430301 8073096 102586751 102608342 100842292 107792143 107832137
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