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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100253054   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 vvi-r.5   100253054   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 ath-u.5   AT2G18940   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100806053   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 gma-u.5   100803889   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 bra-r.6   103874057   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 ppo-u.5   18100481   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 mtr-u.5   11443600   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 ghi-r.1   107907350   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 ghi-r.1   107907496   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 bna-r.1   106430978   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 bna-r.1   106440843   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 cit-r.1   102614242   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 sly-u.5   101263225   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 sot-r.1   102582941   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 nta-r.1   107816237   uncharacterized LOC107816237 
 nta-r.1   107786373   uncharacterized LOC107786373 
 tae-r.2   123156915   pentatricopeptide repeat-containing protein 10, chloroplastic 
 tae-r.2   123149362   pentatricopeptide repeat-containing protein 10, chloroplastic 
 tae-r.2   123164939   pentatricopeptide repeat-containing protein 10, chloroplastic 
 hvu-r.1   123409613   pentatricopeptide repeat-containing protein 10, chloroplastic 
 sbi-r.1   8058454   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 bdi-r.1   100844961   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 

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Top 50 coexpressed genes to 100253054 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100253054 (vvi-u.5 coexpression data)

CoexMap"100253054"


vviLOC100253054 | Entrez gene ID : 100253054      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta tae hvu sbi bdi zma osa cre
Paralog 2 1 2 1 1 1 2 2 1 1 1 2 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002267263.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  plas 1,  cyto_nucl 1  (predict for XP_002267263.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002267263.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100253054
vvi-r.5
for
100253054
ath-u.5
for
AT2G18940
gma-u.5
for
100806053
gma-u.5
for
100803889
bra-r.6
for
103874057
ppo-u.5
for
18100481
mtr-u.5
for
11443600
ghi-r.1
for
107907350
ghi-r.1
for
107907496
bna-r.1
for
106430978
bna-r.1
for
106440843
cit-r.1
for
102614242
sly-u.5
for
101263225
sot-r.1
for
102582941
nta-r.1
for
107816237
nta-r.1
for
107786373
tae-r.2
for
123156915
tae-r.2
for
123149362
tae-r.2
for
123164939
hvu-r.1
for
123409613
sbi-r.1
for
8058454
bdi-r.1
for
100844961


Ortholog ID: 10660
Species vvi ath gma gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta tae tae tae hvu sbi bdi
Symbol LOC100253054 AT2G18940 LOC100806053 LOC100803889 LOC103874057 LOC18100481 LOC11443600 LOC107907350 LOC107907496 LOC106430978 LOC106440843 LOC102614242 LOC101263225 LOC102582941 LOC107816237 LOC107786373 LOC123156915 LOC123149362 LOC123164939 LOC123409613 LOC8058454 LOC100844961
Function* pentatricopeptide repeat-containing protein At2g18940, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic uncharacterized LOC107816237 uncharacterized LOC107786373 pentatricopeptide repeat-containing protein 10, chloroplastic pentatricopeptide repeat-containing protein 10, chloroplastic pentatricopeptide repeat-containing protein 10, chloroplastic pentatricopeptide repeat-containing protein 10, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic pentatricopeptide repeat-containing protein At2g18940, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
nta00740 Riboflavin metabolism 2
nta00790 Folate biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100253054 816411 100806053 100803889 103874057 18100481 11443600 107907350 107907496 106430978 106440843 102614242 101263225 102582941 107816237 107786373 123156915 123149362 123164939 123409613 8058454 100844961
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