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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100254724   DNA-directed RNA polymerase IV subunit 1 
 vvi-r.5   100254724   DNA-directed RNA polymerase IV subunit 1 
 vvi-m.5   100254724   DNA-directed RNA polymerase IV subunit 1 
 ath-u.5   NRPD1A   nuclear RNA polymerase D1A 
 gma-u.5   100810483   DNA-directed RNA polymerase IV subunit 1 
 gma-u.5   100796185   DNA-directed RNA polymerase IV subunit 1 
 ppo-u.5   7490920   DNA-directed RNA polymerase IV subunit 1 
 mtr-u.5   11436803   DNA-directed RNA polymerase IV subunit 1 
 sly-u.5   778259   DNA-directed RNA polymerase IV subunit 1 
 osa-u.5   4347810   DNA-directed RNA polymerase IV subunit 1 
 osa-u.5   4336722   DNA-directed RNA polymerase IV subunit 1 
 zma-u.5   100501057   DNA dependent RNA polymerase D largest subunit 

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Top 50 coexpressed genes to 100254724 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100254724 (vvi-u.5 coexpression data)

CoexMap"100254724"


vviLOC100254724 | Entrez gene ID : 100254724      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03020 [list] [network] RNA polymerase (51 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (199 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (17 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1602 genes)  IEA  
Protein XP_010661365.1 [sequence] [blastp]
XP_010661369.1 [sequence] [blastp]
XP_010661376.1 [sequence] [blastp]
XP_019072896.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  nucl 1,  mito 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_010661365.1)
plas 7,  nucl 1,  mito 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_010661369.1)
plas 5,  nucl 3,  mito_plas 3  (predict for XP_010661376.1)
plas 6,  E.R. 1,  nucl 1,  mito 1,  vacu 1,  cyto_E.R. 1  (predict for XP_019072896.1)
Subcellular
localization
TargetP
other 8  (predict for XP_010661365.1)
other 8  (predict for XP_010661369.1)
mito 5,  other 5  (predict for XP_010661376.1)
other 8  (predict for XP_019072896.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100254724
vvi-r.5
for
100254724
vvi-m.5
for
100254724
ath-u.5
for
NRPD1A
gma-u.5
for
100810483
gma-u.5
for
100796185
ppo-u.5
for
7490920
mtr-u.5
for
11436803
sly-u.5
for
778259
osa-u.5
for
4347810
osa-u.5
for
4336722
zma-u.5
for
100501057


Ortholog ID: 7845
Species vvi ath gma gma bra bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa osa zma tae tae hvu sbi bdi
Symbol LOC100254724 NRPD1A LOC100796185 LOC100810483 LOC103838307 LOC103847833 LOC7490920 LOC11436803 LOC107930048 LOC107926978 LOC106420995 LOC106406243 LOC102607057 LOC778259 LOC102603437 LOC107766126 LOC107794854 LOC4336722 LOC4347810 LOC100501057 LOC123038976 LOC123180590 LOC123426175 LOC8060411 LOC100842842
Function* DNA-directed RNA polymerase IV subunit 1 nuclear RNA polymerase D1A DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA dependent RNA polymerase D largest subunit DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1 DNA-directed RNA polymerase IV subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 3
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra04075 Plant hormone signal transduction 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00100 Steroid biosynthesis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00100 Steroid biosynthesis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 3
osa03013 Nucleocytoplasmic transport 3
osa03020 RNA polymerase 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03020 RNA polymerase 2
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03040 Spliceosome 4
tae03083 Polycomb repressive complex 3
tae03020 RNA polymerase 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
bdi03013 Nucleocytoplasmic transport 2
bdi03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100254724 842605 100796185 100810483 103838307 103847833 7490920 11436803 107930048 107926978 106420995 106406243 102607057 778259 102603437 107766126 107794854 4336722 4347810 100501057 123038976 123180590 123426175 8060411 100842842
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